Configure Git Repository

Configure Git Repository

Set up a Git repository with appropriate configuration for the project type.

When to Use

• Initializing version control for a new project
• Adding .gitignore for a specific language/​framework
• Setting up branch protection and conventions
• Configuring commit hooks

Inputs

• Required: Project directory
• Required: Project type (R package, Node.js, Python, general)
• Optional: Remote repository URL
• Optional: Branch strategy (trunk-based, Git Flow)
• Optional: Commit message convention

Procedure

Step 1: Initialize Repository

cd /​path/​to/​project
git init
git branch -M main

Expected: .git/ directory created. Default branch is named main.

On failure: If git init fails, ensure Git is installed (git --version). If the directory already has a .git/, the repository is already initialized — skip this step.

Step 2: Create .gitignore

R Package:

# R artifacts
.Rhistory
.RData
.Rproj.user/
*.Rproj

# Environment (sensitive)
.Renviron

# renv library (machine-specific)
renv/​library/
renv/​staging/
renv/​cache/

# Build artifacts
*.tar.gz
src/​*.o
src/​*.so
src/​*.dll

# Documentation build
docs/
inst/​doc/

# IDE
.vscode/
.idea/

# OS
.DS_Store
Thumbs.db

Node.js/​TypeScript:

node_modules/
dist/
build/
.next/
.env
.env.local
.env.*.local
*.log
npm-debug.log*
.DS_Store
Thumbs.db
.vscode/
.idea/
coverage/

Python:

__pycache__/
*.py[cod]
*.egg-info/
dist/
build/
.eggs/
.venv/
venv/
.env
*.log
.mypy_cache/
.pytest_cache/
htmlcov/
.coverage
.DS_Store
.idea/
.vscode/

Expected: .gitignore file created with entries appropriate for the project type. Sensitive files (.Renviron, .env) and generated artifacts are excluded.

On failure: If unsure which entries to include, use gitignore.io or GitHub's .gitignore templates as a starting point and customize for the project.

Step 3: Create Initial Commit

git add .gitignore
git add .  # Review what's being added first with git status
git commit -m "Initial project setup"

Expected: First commit created containing .gitignore and initial project files. git log shows one commit.

On failure: If git commit fails with "nothing to commit," ensure files were staged with git add. If it fails with an author identity error, set git config user.name and git config user.email.

Step 4: Connect Remote

# Add remote
git remote add origin [email protected]:username/​repo.git

# Push
git push -u origin main

Expected: Remote origin is configured. git remote -v shows fetch and push URLs. Initial commit is pushed to the remote.

On failure: If push fails with "Permission denied (publickey)," configure SSH keys (see setup-wsl-dev-environment). If the remote already exists, update it with git remote set-url origin <url>.

Step 5: Set Up Branch Conventions

Trunk-based (recommended for small teams):

• main: production-ready code
• Feature branches: feature/​description
• Bug fixes: fix/​description

# Create feature branch
git checkout -b feature/​add-authentication

# After work is done, merge or create PR
git checkout main
git merge feature/​add-authentication

Expected: Branch naming convention is established and documented. Team members know which prefix to use for each type of work.

On failure: If branches are already named inconsistently, rename them with git branch -m old-name new-name and update any open PRs.

Step 6: Configure Commit Conventions

Conventional Commits format:

type(scope): description

feat: add user authentication
fix: correct calculation in weighted_mean
docs: update README installation section
test: add edge case tests for parser
refactor: extract helper function
chore: update dependencies

Expected: Commit message convention is documented and agreed upon by the team. Future commits follow the type: description format.

On failure: If team members are not following the convention, enforce it with a commit-msg hook that validates the format (see Step 7).

Step 7: Set Up Pre-Commit Hooks (Optional)

Create .githooks/​pre-commit:

#!/​bin/​bash
# Run linter before commit

# For R packages
if [ -f "DESCRIPTION" ]; then
  Rscript -e "lintr::lint_package()" || exit 1
fi

# For Node.js
if [ -f "package.json" ]; then
  npm run lint || exit 1
fi

chmod +x .githooks/​pre-commit
git config core.hooksPath .githooks

Expected: Pre-commit hook runs automatically on each git commit. Linting errors block the commit until fixed.

On failure: If the hook does not run, verify core.hooksPath is set (git config core.hooksPath) and the hook file is executable (chmod +x).

Step 8: Create README

# Minimal README
echo "# Project Name" > README.md
echo "" >> README.md
echo "Brief description of the project." >> README.md
git add README.md
git commit -m "Add README"

Expected: README.md committed to the repository. The project has a minimal but informative landing page on GitHub.

On failure: If README.md already exists, update it rather than overwriting. Use usethis::use_readme_md() in R projects for a template with badges.

Validation

• .gitignore excludes sensitive and generated files
• No sensitive data (tokens, passwords) in tracked files
• Remote repository connected and accessible
• Branch naming conventions documented
• Initial commit created cleanly

Common Pitfalls

• Committing before .gitignore: Add .gitignore first. Files already tracked aren't affected by later .gitignore entries.
• Sensitive data in history: If secrets are committed, they remain in history even after deletion. Use git filter-repo or BFG to clean.
• Large binary files: Don't commit large binaries. Use Git LFS for files > 1MB.
• Line endings: Set core.autocrlf=input on Windows/​WSL to prevent CRLF/​LF issues.

Related Skills

• commit-changes - staging and committing workflow
• manage-git-branches - branch creation and conventions
• create-r-package - Git setup as part of R package creation
• setup-wsl-dev-environment - Git installation and SSH keys
• create-github-release - creating releases from the repository
• security-audit-codebase - check for committed secrets