Managing Permissions

Managing Permissions

Configure Claude Code permissions to control tool access and protect sensitive files.

Overview

Permissions are configured in settings.json using three groups: allow, ask, and deny.

Rule precedence: Deny > Ask > Allow

Configuration hierarchy (highest to lowest):

1. Managed settings (enterprise policies)
2. Command-line arguments
3. Local project settings (.claude/​settings.local.json)
4. Shared project settings (.claude/​settings.json)
5. User global settings (~/​.claude/​settings.json)

Permission Groups

Allow

Grants explicit permission for tool use without confirmation.

When to use: Safe, routine operations that don't risk data loss or security exposure.

Examples: Reading source code, running tests, read-only git commands.

See references/​allow-permissions.md for guidance and examples.

Ask

Prompts for user confirmation before allowing tool use.

When to use: Operations requiring review, such as publishing changes or modifying dependencies.

Examples: Git push/​commit, package installation, editing critical config files.

See references/​ask-permissions.md for examples and avoiding permission fatigue.

Deny

Explicitly blocks tool use. Takes precedence over allow and ask rules.

⚠️ Important: Deny rules are workflow controls, NOT security mechanisms. They have significant limitations (tool-specific, easily bypassed, prefix-only matching for Bash).

When to use:

• Resource management (blocking node_modules, build artifacts to save tokens)
• Workflow guardrails (preventing accidental git push to main)
• Focus management (avoiding deprecated/​legacy code)

NOT for security: For protecting secrets and credentials, use hooks instead (PreToolUse hooks provide tool-agnostic protection).

See references/​deny-permissions.md for key limitations and proper use cases.

Basic Syntax

All permission rules follow this format:

ToolName(pattern)

Available Tools: Bash, Read, Edit, Write, Glob, Grep, WebFetch, WebSearch, NotebookEdit, Task, Skill, SlashCommand, TodoWrite, AskUserQuestion, BashOutput, KillShell, ExitPlanMode

Most common: Bash, Read, Edit, Write, Glob, Grep, WebFetch

Pattern types:

• Bash: Prefix matching - Bash(git status) matches "git status", "git status file.txt"
• File tools: Glob matching - Read(src/​**) matches all files in src/ recursively

Important: Bash patterns use prefix-only matching and can be bypassed with command chaining. See deny-permissions.md for complete limitations.

See references/​official-reference.md for complete syntax reference and known limitations.

Configuration Workflow

When setting up permissions:

1. For security: Use hooks - Protect secrets with PreToolUse hooks (deny rules aren't sufficient for security)
2. Add deny rules - Block large files (node_modules, build artifacts) to save tokens, prevent workflow mistakes
3. Add allow rules - Enable routine safe operations
4. Add ask rules - Require confirmation for important operations
5. Test configuration - Verify typical workflows work correctly
6. Iterate - Add rules as needed based on actual usage

Getting Started

For security: Use PreToolUse hooks to protect secrets and credentials (see Claude Code documentation on hooks).

Sample workflow configuration:

{
  "permissions": {
    "deny": [
      // Resource management (save tokens)
      "Read(node_modules/​**)",
      "Read(build/​**)",
      "Read(dist/​**)",
      "Read(*.min.js)",

      // Workflow guardrails (prevent mistakes)
      "Bash(git push origin main:*)",
      "Bash(npm publish:*)"
    ],
    "allow": [
      "Bash(bun run test:*)",
      "Bash(git status)",
      "Bash(git diff:*)",
      "Read(src/​**)",
      "Read(tests/​**)"
    ],
    "ask": [
      "Bash(git push:*)",
      "Bash(bun install:*)"
    ]
  }
}

Note: Hooks handle security (secrets, credentials). Deny rules handle workflow controls.

Reference Files

Concise guides with practical examples:

• references/​allow-permissions.md - What to allow (non-destructive, reversible operations), practical examples, key principles
• references/​ask-permissions.md - What to ask for (external changes, dependencies, critical configs), avoiding permission fatigue
• references/​deny-permissions.md - Key limitations (tool-specific), proper use cases (resource management, workflow guardrails), why hooks are needed for security
• references/​layering-permissions.md - Strategic permission layering (broad allow + narrow ask/​deny), how precedence enables maintainable configurations, critical warning about build tools
• references/​git-permissions.md - Git-specific permission patterns, security implications of git commands
• references/​build-tool-permissions.md - Recommended configuration patterns for build tools (npm, gradle, maven, make, cargo, etc.), core principles, decision framework
• references/​official-reference.md - Complete technical reference, glob syntax, known limitations