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Linear Solvers

linear-solvers

Select and configure linear solvers for systems Ax=b in dense and sparse problems. Use when choosing direct vs iterative methods, diagnosing convergence issues, estimating conditioning, selecting preconditioners, or debugging stagnation in GMRES/CG/BiCGSTAB.

SKILL.md

Full skill instructions

Linear Solvers

Goal

Provide a universal workflow to select a solver, assess conditioning, and diagnose convergence for linear systems arising in numerical simulations.

Requirements

  • Python 3.8+
  • NumPy, SciPy (for matrix operations)
  • See individual scripts for dependencies

Inputs to Gather

InputDescriptionExample
Matrix sizeDimension of systemn = 1000000
SparsityFraction of nonzeros0.01%
SymmetryIs A = Aᵀ?yes
DefinitenessIs A positive definite?yes (SPD)
ConditioningEstimated condition number10⁶

Decision Guidance

Solver Selection Flowchart

Is matrix small (n < 5000) and dense?
├── YES → Use direct solver (LU, Cholesky)
└── NO → Is matrix symmetric?
    ├── YES → Is it positive definite?
    │   ├── YES → Use CG with AMG/​IC preconditioner
    │   └── NO → Use MINRES
    └── NO → Is it nearly symmetric?
        ├── YES → Use BiCGSTAB
        └── NO → Use GMRES with ILU/​AMG

Quick Reference

Matrix TypeSolverPreconditioner
SPD, sparseCGAMG, IC
Symmetric indefiniteMINRESILU
NonsymmetricGMRES, BiCGSTABILU, AMG
DenseLU, CholeskyNone
Saddle pointSchur complement, UzawaBlock preconditioner

Script Outputs (JSON Fields)

ScriptKey Outputs
scripts/​solver_selector.pyrecommended, alternatives, notes
scripts/​convergence_diagnostics.pyrate, stagnation, recommended_action
scripts/​sparsity_stats.pynnz, density, bandwidth, symmetry
scripts/​preconditioner_advisor.pysuggested, notes
scripts/​scaling_equilibration.pyrow_scale, col_scale, notes
scripts/​residual_norms.pyresidual_norms, relative_norms, converged

Workflow

  1. Characterize matrix - symmetry, definiteness, sparsity
  2. Analyze sparsity - Run scripts/​sparsity_stats.py
  3. Select solver - Run scripts/​solver_selector.py
  4. Choose preconditioner - Run scripts/​preconditioner_advisor.py
  5. Apply scaling - If ill-conditioned, use scripts/​scaling_equilibration.py
  6. Monitor convergence - Use scripts/​convergence_diagnostics.py
  7. Diagnose issues - Check residual history with scripts/​residual_norms.py

Conversational Workflow Example

User: My GMRES solver is stagnating after 50 iterations. The residual drops to 1e-3 then stops improving.

Agent workflow:

  1. Diagnose convergence:
    python3 scripts/​convergence_diagnostics.py --residuals 1,0.1,0.01,0.005,0.003,0.002,0.002,0.002 --json
    
  2. Check for preconditioning advice:
    python3 scripts/​preconditioner_advisor.py --matrix-type nonsymmetric --sparse --stagnation --json
    
  3. Recommend: Increase restart parameter, try ILU(k) with higher k, or switch to AMG.

Pre-Solve Checklist

  • Confirm matrix symmetry/​definiteness
  • Decide direct vs iterative based on size and sparsity
  • Set residual tolerance relative to physics scale
  • Choose preconditioner appropriate to matrix structure
  • Apply scaling/​equilibration if needed
  • Track convergence and adjust if stagnation occurs

CLI Examples

# Analyze sparsity pattern
python3 scripts/​sparsity_stats.py --matrix A.npy --json

# Select solver for SPD sparse system
python3 scripts/​solver_selector.py --symmetric --positive-definite --sparse --size 1000000 --json

# Get preconditioner recommendation
python3 scripts/​preconditioner_advisor.py --matrix-type spd --sparse --json

# Diagnose convergence from residual history
python3 scripts/​convergence_diagnostics.py --residuals 1,0.2,0.05,0.01 --json

# Apply scaling
python3 scripts/​scaling_equilibration.py --matrix A.npy --symmetric --json

# Compute residual norms
python3 scripts/​residual_norms.py --residual 1,0.1,0.01 --rhs 1,0,0 --json

Error Handling

ErrorCauseResolution
Matrix file not foundInvalid pathCheck file exists
Matrix must be squareNon-square inputVerify matrix dimensions
Residuals must be positiveInvalid residual dataCheck input format

Interpretation Guidance

Convergence Rate

RateMeaningAction
< 0.1ExcellentCurrent setup optimal
0.1 - 0.5GoodAcceptable for most problems
0.5 - 0.9SlowConsider better preconditioner
> 0.9StagnationChange solver or preconditioner

Stagnation Diagnosis

PatternLikely CauseFix
Flat residualPoor preconditionerImprove preconditioner
OscillatingNear-singular or indefiniteCheck matrix, try different solver
Very slow decayIll-conditionedApply scaling, use AMG

Limitations

  • Large dense matrices: Direct solvers may run out of memory
  • Highly indefinite: Standard preconditioners may fail
  • Saddle-point: Requires specialized block preconditioners

References

  • references/​solver_decision_tree.md - Selection logic
  • references/​preconditioner_catalog.md - Preconditioner options
  • references/​convergence_patterns.md - Diagnosing failures
  • references/​scaling_guidelines.md - Equilibration guidance

Version History

  • v1.1.0 (2024-12-24): Enhanced documentation, decision guidance, examples
  • v1.0.0: Initial release with 6 solver analysis scripts