Create Figure

create-figure

Generate publication-quality figures from code analysis data for academic papers.

Quick Start for Agents

Don't get overwhelmed by 50+ commands! Use domain navigation:

# Step 1: Find your domain
create-figure domains

# Step 2: List commands for your domain
create-figure list --domain ml        # ML/​LLM projects
create-figure list --domain control   # Aerospace/​control systems
create-figure list --domain bio       # Bioinformatics

# Step 3: Or get recommendations by data type
create-figure recommend --data-type classification
create-figure recommend --data-type time_series
create-figure recommend --show-types  # See all data types

Domain Quick Reference

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Architecture

Multi-backend design for maximum compatibility:

Common Commands

deps - Dependency Graph

./​run.sh deps --project /​path/​to/​package --output deps.pdf
./​run.sh deps -p ./​src -o deps.svg --backend mermaid --depth 3

architecture - Architecture Diagram

./​run.sh architecture --project ./​assess_output.json --output arch.pdf

metrics - Metrics Chart

./​run.sh metrics --input data.json --output metrics.pdf --type bar
./​run.sh metrics -i data.json -o chart.pdf --type pie --title "Issue Distribution"

Chart types: bar, hbar, pie, line

workflow - Workflow Diagram

./​run.sh workflow --stages "Scope,Analysis,Search,Learn,Draft" --output workflow.pdf

confusion-matrix - Confusion Matrix

./​run.sh confusion-matrix --input results.json --output confusion.pdf --normalize

roc-curve - ROC Curve

./​run.sh roc-curve --input roc_data.json --output roc.pdf

bode - Bode Plot

./​run.sh bode --num 1,2 --den 1,3,2 --output bode.pdf

heatmap - Heatmap

./​run.sh heatmap --input matrix.json --output flux.pdf --cmap plasma

sankey - Sankey Diagram

./​run.sh sankey --input flows.json --output sankey.pdf

from-assess - Generate All Figures

Generate all figures from /​assess output in one command:

./​run.sh from-assess --input assess_output.json --output-dir ./​figures/

Generates:

• architecture.pdf - System architecture diagram
• dependencies.pdf - Module dependency graph
• features.pdf - Feature distribution chart
• issues.pdf - Issue severity pie chart

Publication Quality Settings

matplotlib figures use IEEE publication settings:

• Font: 8pt Times New Roman (serif)
• DPI: 600 for saving, 300 for display
• Column widths: Single (3.5"), Double (7.16")
• TrueType fonts for Illustrator compatibility

Dependencies

Required:

• Python 3.10+
• typer
• numpy

Optional (enables features):

Installation

# Core
pip install typer numpy matplotlib

# Full installation (all features)
pip install typer numpy matplotlib seaborn plotly networkx pandas squarify scipy control pydeps pylint

# System dependencies
apt install graphviz  # Debian/​Ubuntu
npm install -g @mermaid-js/​mermaid-cli