labarchive-integration
Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with Protocols.io/Jupyter/REDCap, for programmatic ELN workflows.
sast-configuration
Configure Static Application Security Testing (SAST) tools for automated vulnerability detection in application code. Use when setting up security scanning, implementing DevSecOps practices, or automating code vulnerability detection.
Full skill instructions
Static Application Security Testing (SAST) tool setup, configuration, and custom rule creation for comprehensive security scanning across multiple programming languages.
This skill provides comprehensive guidance for setting up and configuring SAST tools including Semgrep, SonarQube, and CodeQL. Use this skill when you need to:
# Semgrep quick start
pip install semgrep
semgrep --config=auto --error
# SonarQube with Docker
docker run -d --name sonarqube -p 9000:9000 sonarqube:latest
# CodeQL CLI setup
gh extension install github/gh-codeql
codeql database create mydb --language=python
# GitHub Actions example
- name: Run Semgrep
uses: returntocorp/semgrep-action@v1
with:
config: >-
p/security-audit
p/owasp-top-ten
# .pre-commit-config.yaml
- repo: https://github.com/returntocorp/semgrep
rev: v1.45.0
hooks:
- id: semgrep
args: ['--config=auto', '--error']
Start with Baseline
Incremental Adoption
False Positive Management
Performance Optimization
Team Enablement
./scripts/run-sast.sh --setup --language python --tools semgrep,sonarqube
# See references/semgrep-rules.md for detailed examples
rules:
- id: hardcoded-jwt-secret
pattern: jwt.encode($DATA, "...", ...)
message: JWT secret should not be hardcoded
severity: ERROR
# PCI-DSS focused scan
semgrep --config p/pci-dss --json -o pci-scan-results.json
| Tool | Best For | Language Support | Cost | Integration |
|---|---|---|---|---|
| Semgrep | Custom rules, fast scans | 30+ languages | Free/Enterprise | Excellent |
| SonarQube | Code quality + security | 25+ languages | Free/Commercial | Good |
| CodeQL | Deep analysis, research | 10+ languages | Free (OSS) | GitHub native |
Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with Protocols.io/Jupyter/REDCap, for programmatic ELN workflows.
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