labarchive-integration
Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with Protocols.io/Jupyter/REDCap, for programmatic ELN workflows.
monorepo-management
Master monorepo management with Turborepo, Nx, and pnpm workspaces to build efficient, scalable multi-package repositories with optimized builds and dependency management. Use when setting up monorepos, optimizing builds, or managing shared dependencies.
Full skill instructions
Build efficient, scalable monorepos that enable code sharing, consistent tooling, and atomic changes across multiple packages and applications.
Advantages:
Challenges:
Package Managers:
Build Systems:
# Create new monorepo
npx create-turbo@latest my-monorepo
cd my-monorepo
# Structure:
# apps/
# web/ - Next.js app
# docs/ - Documentation site
# packages/
# ui/ - Shared UI components
# config/ - Shared configurations
# tsconfig/ - Shared TypeScript configs
# turbo.json - Turborepo configuration
# package.json - Root package.json
// turbo.json
{
"$schema": "https://turbo.build/schema.json",
"globalDependencies": ["**/.env.*local"],
"pipeline": {
"build": {
"dependsOn": ["^build"],
"outputs": ["dist/**", ".next/**", "!.next/cache/**"]
},
"test": {
"dependsOn": ["build"],
"outputs": ["coverage/**"]
},
"lint": {
"outputs": []
},
"dev": {
"cache": false,
"persistent": true
},
"type-check": {
"dependsOn": ["^build"],
"outputs": []
}
}
}
// package.json (root)
{
"name": "my-monorepo",
"private": true,
"workspaces": [
"apps/*",
"packages/*"
],
"scripts": {
"build": "turbo run build",
"dev": "turbo run dev",
"test": "turbo run test",
"lint": "turbo run lint",
"format": "prettier --write \"**/*.{ts,tsx,md}\"",
"clean": "turbo run clean && rm -rf node_modules"
},
"devDependencies": {
"turbo": "^1.10.0",
"prettier": "^3.0.0",
"typescript": "^5.0.0"
},
"packageManager": "[email protected]"
}
// packages/ui/package.json
{
"name": "@repo/ui",
"version": "0.0.0",
"private": true,
"main": "./dist/index.js",
"types": "./dist/index.d.ts",
"exports": {
".": {
"import": "./dist/index.js",
"types": "./dist/index.d.ts"
},
"./button": {
"import": "./dist/button.js",
"types": "./dist/button.d.ts"
}
},
"scripts": {
"build": "tsup src/index.ts --format esm,cjs --dts",
"dev": "tsup src/index.ts --format esm,cjs --dts --watch",
"lint": "eslint src/",
"type-check": "tsc --noEmit"
},
"devDependencies": {
"@repo/tsconfig": "workspace:*",
"tsup": "^7.0.0",
"typescript": "^5.0.0"
},
"dependencies": {
"react": "^18.2.0"
}
}
# pnpm-workspace.yaml
packages:
- 'apps/*'
- 'packages/*'
- 'tools/*'
// .npmrc
# Hoist shared dependencies
shamefully-hoist=true
# Strict peer dependencies
auto-install-peers=true
strict-peer-dependencies=true
# Performance
store-dir=~/.pnpm-store
# Install dependency in specific package
pnpm add react --filter @repo/ui
pnpm add -D typescript --filter @repo/ui
# Install workspace dependency
pnpm add @repo/ui --filter web
# Install in all packages
pnpm add -D eslint -w
# Update all dependencies
pnpm update -r
# Remove dependency
pnpm remove react --filter @repo/ui
# Run script in specific package
pnpm --filter web dev
pnpm --filter @repo/ui build
# Run in all packages
pnpm -r build
pnpm -r test
# Run in parallel
pnpm -r --parallel dev
# Filter by pattern
pnpm --filter "@repo/*" build
pnpm --filter "...web" build # Build web and dependencies
# Create Nx monorepo
npx create-nx-workspace@latest my-org
# Generate applications
nx generate @nx/react:app my-app
nx generate @nx/next:app my-next-app
# Generate libraries
nx generate @nx/react:lib ui-components
nx generate @nx/js:lib utils
// nx.json
{
"extends": "nx/presets/npm.json",
"$schema": "./node_modules/nx/schemas/nx-schema.json",
"targetDefaults": {
"build": {
"dependsOn": ["^build"],
"inputs": ["production", "^production"],
"cache": true
},
"test": {
"inputs": ["default", "^production", "{workspaceRoot}/jest.preset.js"],
"cache": true
},
"lint": {
"inputs": ["default", "{workspaceRoot}/.eslintrc.json"],
"cache": true
}
},
"namedInputs": {
"default": ["{projectRoot}/**/*", "sharedGlobals"],
"production": [
"default",
"!{projectRoot}/**/?(*.)+(spec|test).[jt]s?(x)?(.snap)",
"!{projectRoot}/tsconfig.spec.json"
],
"sharedGlobals": []
}
}
# Run task for specific project
nx build my-app
nx test ui-components
nx lint utils
# Run for affected projects
nx affected:build
nx affected:test --base=main
# Visualize dependencies
nx graph
# Run in parallel
nx run-many --target=build --all --parallel=3
// packages/tsconfig/base.json
{
"compilerOptions": {
"strict": true,
"esModuleInterop": true,
"skipLibCheck": true,
"forceConsistentCasingInFileNames": true,
"module": "ESNext",
"moduleResolution": "bundler",
"resolveJsonModule": true,
"isolatedModules": true,
"incremental": true,
"declaration": true
},
"exclude": ["node_modules"]
}
// packages/tsconfig/react.json
{
"extends": "./base.json",
"compilerOptions": {
"jsx": "react-jsx",
"lib": ["ES2022", "DOM", "DOM.Iterable"]
}
}
// apps/web/tsconfig.json
{
"extends": "@repo/tsconfig/react.json",
"compilerOptions": {
"outDir": "dist",
"rootDir": "src"
},
"include": ["src"],
"exclude": ["node_modules", "dist"]
}
// packages/config/eslint-preset.js
module.exports = {
extends: [
'eslint:recommended',
'plugin:@typescript-eslint/recommended',
'plugin:react/recommended',
'plugin:react-hooks/recommended',
'prettier',
],
plugins: ['@typescript-eslint', 'react', 'react-hooks'],
parser: '@typescript-eslint/parser',
parserOptions: {
ecmaVersion: 2022,
sourceType: 'module',
ecmaFeatures: {
jsx: true,
},
},
settings: {
react: {
version: 'detect',
},
},
rules: {
'@typescript-eslint/no-unused-vars': 'error',
'react/react-in-jsx-scope': 'off',
},
};
// apps/web/.eslintrc.js
module.exports = {
extends: ['@repo/config/eslint-preset'],
rules: {
// App-specific rules
},
};
// packages/ui/src/button.tsx
import * as React from 'react';
export interface ButtonProps {
variant?: 'primary' | 'secondary';
children: React.ReactNode;
onClick?: () => void;
}
export function Button({ variant = 'primary', children, onClick }: ButtonProps) {
return (
<button
className={`btn btn-${variant}`}
onClick={onClick}
>
{children}
</button>
);
}
// packages/ui/src/index.ts
export { Button, type ButtonProps } from './button';
export { Input, type InputProps } from './input';
// apps/web/src/app.tsx
import { Button } from '@repo/ui';
export function App() {
return <Button variant="primary">Click me</Button>;
}
// packages/utils/src/string.ts
export function capitalize(str: string): string {
return str.charAt(0).toUpperCase() + str.slice(1);
}
export function truncate(str: string, length: number): string {
return str.length > length ? str.slice(0, length) + '...' : str;
}
// packages/utils/src/index.ts
export * from './string';
export * from './array';
export * from './date';
// Usage in apps
import { capitalize, truncate } from '@repo/utils';
// packages/types/src/user.ts
export interface User {
id: string;
email: string;
name: string;
role: 'admin' | 'user';
}
export interface CreateUserInput {
email: string;
name: string;
password: string;
}
// Used in both frontend and backend
import type { User, CreateUserInput } from '@repo/types';
// turbo.json
{
"pipeline": {
"build": {
// Build depends on dependencies being built first
"dependsOn": ["^build"],
// Cache these outputs
"outputs": ["dist/**", ".next/**"],
// Cache based on these inputs (default: all files)
"inputs": ["src/**/*.tsx", "src/**/*.ts", "package.json"]
},
"test": {
// Run tests in parallel, don't depend on build
"cache": true,
"outputs": ["coverage/**"]
}
}
}
# Turborepo Remote Cache (Vercel)
npx turbo login
npx turbo link
# Custom remote cache
# turbo.json
{
"remoteCache": {
"signature": true,
"enabled": true
}
}
# .github/workflows/ci.yml
name: CI
on:
push:
branches: [main]
pull_request:
branches: [main]
jobs:
build:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0 # For Nx affected commands
- uses: pnpm/action-setup@v2
with:
version: 8
- uses: actions/setup-node@v3
with:
node-version: 18
cache: 'pnpm'
- name: Install dependencies
run: pnpm install --frozen-lockfile
- name: Build
run: pnpm turbo run build
- name: Test
run: pnpm turbo run test
- name: Lint
run: pnpm turbo run lint
- name: Type check
run: pnpm turbo run type-check
# Deploy only changed apps
- name: Deploy affected apps
run: |
if pnpm nx affected:apps --base=origin/main --head=HEAD | grep -q "web"; then
echo "Deploying web app"
pnpm --filter web deploy
fi
# Using Changesets
pnpm add -Dw @changesets/cli
pnpm changeset init
# Create changeset
pnpm changeset
# Version packages
pnpm changeset version
# Publish
pnpm changeset publish
# .github/workflows/release.yml
- name: Create Release Pull Request or Publish
uses: changesets/action@v1
with:
publish: pnpm release
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
NPM_TOKEN: ${{ secrets.NPM_TOKEN }}
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