labarchive-integration
Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with Protocols.io/Jupyter/REDCap, for programmatic ELN workflows.
markitdown
Convert various file formats (PDF, Office documents, images, audio, web content, structured data) to Markdown optimized for LLM processing. Use when converting documents to markdown, extracting text from PDFs/Office files, transcribing audio, performing OCR on images, extracting YouTube transcrip...
Full skill instructions
MarkItDown is a Python utility that converts various file formats into Markdown format, optimized for use with large language models and text analysis pipelines. It preserves document structure (headings, lists, tables, hyperlinks) while producing clean, token-efficient Markdown output.
Use this skill when users request:
Convert Office documents and PDFs to Markdown while preserving structure.
Supported formats:
Basic usage:
from markitdown import MarkItDown
md = MarkItDown()
result = md.convert("document.pdf")
print(result.text_content)
Command-line:
markitdown document.pdf -o output.md
See references/document_conversion.md for detailed documentation on document-specific features.
Extract text from images using OCR and transcribe audio files to text.
Supported formats:
Image with OCR:
from markitdown import MarkItDown
md = MarkItDown()
result = md.convert("image.jpg")
print(result.text_content) # Includes EXIF metadata and OCR text
Audio transcription:
result = md.convert("audio.wav")
print(result.text_content) # Transcribed speech
See references/media_processing.md for advanced media handling options.
Convert web-based content and e-books to Markdown.
Supported formats:
YouTube transcript:
from markitdown import MarkItDown
md = MarkItDown()
result = md.convert("https://youtube.com/watch?v=VIDEO_ID")
print(result.text_content)
See references/web_content.md for web extraction details.
Convert structured data formats to readable Markdown tables.
Supported formats:
CSV to Markdown table:
from markitdown import MarkItDown
md = MarkItDown()
result = md.convert("data.csv")
print(result.text_content) # Formatted as Markdown table
See references/structured_data.md for format-specific options.
Enhance conversion quality with AI-powered features.
Azure Document Intelligence: For enhanced PDF processing with better table extraction and layout analysis:
from markitdown import MarkItDown
md = MarkItDown(docintel_endpoint="<endpoint>", docintel_key="<key>")
result = md.convert("complex.pdf")
LLM-Powered Image Descriptions: Generate detailed image descriptions using GPT-4o:
from markitdown import MarkItDown
from openai import OpenAI
client = OpenAI()
md = MarkItDown(llm_client=client, llm_model="gpt-4o")
result = md.convert("presentation.pptx") # Images described with LLM
See references/advanced_integrations.md for integration details.
Process multiple files or entire ZIP archives at once.
ZIP file processing:
from markitdown import MarkItDown
md = MarkItDown()
result = md.convert("archive.zip")
print(result.text_content) # All files converted and concatenated
Batch script: Use the provided batch processing script for directory conversion:
python scripts/batch_convert.py /path/to/documents /path/to/output
See scripts/batch_convert.py for implementation details.
Full installation (all features):
pip install 'markitdown[all]'
Modular installation (specific features):
pip install 'markitdown[pdf]' # PDF support
pip install 'markitdown[docx]' # Word support
pip install 'markitdown[pptx]' # PowerPoint support
pip install 'markitdown[xlsx]' # Excel support
pip install 'markitdown[audio]' # Audio transcription
pip install 'markitdown[youtube]' # YouTube transcripts
Requirements:
MarkItDown produces clean, token-efficient Markdown optimized for LLM consumption:
Preparing documents for RAG:
from markitdown import MarkItDown
md = MarkItDown()
# Convert knowledge base documents
docs = ["manual.pdf", "guide.docx", "faq.html"]
markdown_content = []
for doc in docs:
result = md.convert(doc)
markdown_content.append(result.text_content)
# Now ready for embedding and indexing
Document analysis pipeline:
# Convert all PDFs in directory
for file in documents/*.pdf; do
markitdown "$file" -o "markdown/$(basename "$file" .pdf).md"
done
MarkItDown supports extensible plugins for custom conversion logic. Plugins are disabled by default for security:
from markitdown import MarkItDown
# Enable plugins if needed
md = MarkItDown(enable_plugins=True)
This skill includes comprehensive reference documentation for each capability:
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