labarchive-integration
Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with Protocols.io/Jupyter/REDCap, for programmatic ELN workflows.
langchain-architecture
Design LLM applications using the LangChain framework with agents, memory, and tool integration patterns. Use when building LangChain applications, implementing AI agents, or creating complex LLM workflows.
Full skill instructions
Master the LangChain framework for building sophisticated LLM applications with agents, chains, memory, and tool integration.
Autonomous systems that use LLMs to decide which actions to take.
Agent Types:
Sequences of calls to LLMs or other utilities.
Chain Types:
Systems for maintaining context across interactions.
Memory Types:
Loading, transforming, and storing documents for retrieval.
Components:
Hooks for logging, monitoring, and debugging.
Use Cases:
from langchain.agents import AgentType, initialize_agent, load_tools
from langchain.llms import OpenAI
from langchain.memory import ConversationBufferMemory
# Initialize LLM
llm = OpenAI(temperature=0)
# Load tools
tools = load_tools(["serpapi", "llm-math"], llm=llm)
# Add memory
memory = ConversationBufferMemory(memory_key="chat_history")
# Create agent
agent = initialize_agent(
tools,
llm,
agent=AgentType.CONVERSATIONAL_REACT_DESCRIPTION,
memory=memory,
verbose=True
)
# Run agent
result = agent.run("What's the weather in SF? Then calculate 25 * 4")
from langchain.chains import RetrievalQA
from langchain.document_loaders import TextLoader
from langchain.text_splitter import CharacterTextSplitter
from langchain.vectorstores import Chroma
from langchain.embeddings import OpenAIEmbeddings
# Load and process documents
loader = TextLoader('documents.txt')
documents = loader.load()
text_splitter = CharacterTextSplitter(chunk_size=1000, chunk_overlap=200)
texts = text_splitter.split_documents(documents)
# Create vector store
embeddings = OpenAIEmbeddings()
vectorstore = Chroma.from_documents(texts, embeddings)
# Create retrieval chain
qa_chain = RetrievalQA.from_chain_type(
llm=llm,
chain_type="stuff",
retriever=vectorstore.as_retriever(),
return_source_documents=True
)
# Query
result = qa_chain({"query": "What is the main topic?"})
from langchain.agents import Tool, AgentExecutor
from langchain.agents.react.base import ReActDocstoreAgent
from langchain.tools import tool
@tool
def search_database(query: str) -> str:
"""Search internal database for information."""
# Your database search logic
return f"Results for: {query}"
@tool
def send_email(recipient: str, content: str) -> str:
"""Send an email to specified recipient."""
# Email sending logic
return f"Email sent to {recipient}"
tools = [search_database, send_email]
agent = initialize_agent(
tools,
llm,
agent=AgentType.ZERO_SHOT_REACT_DESCRIPTION,
verbose=True
)
from langchain.chains import LLMChain, SequentialChain
from langchain.prompts import PromptTemplate
# Step 1: Extract key information
extract_prompt = PromptTemplate(
input_variables=["text"],
template="Extract key entities from: {text}\n\nEntities:"
)
extract_chain = LLMChain(llm=llm, prompt=extract_prompt, output_key="entities")
# Step 2: Analyze entities
analyze_prompt = PromptTemplate(
input_variables=["entities"],
template="Analyze these entities: {entities}\n\nAnalysis:"
)
analyze_chain = LLMChain(llm=llm, prompt=analyze_prompt, output_key="analysis")
# Step 3: Generate summary
summary_prompt = PromptTemplate(
input_variables=["entities", "analysis"],
template="Summarize:\nEntities: {entities}\nAnalysis: {analysis}\n\nSummary:"
)
summary_chain = LLMChain(llm=llm, prompt=summary_prompt, output_key="summary")
# Combine into sequential chain
overall_chain = SequentialChain(
chains=[extract_chain, analyze_chain, summary_chain],
input_variables=["text"],
output_variables=["entities", "analysis", "summary"],
verbose=True
)
# For short conversations (< 10 messages)
from langchain.memory import ConversationBufferMemory
memory = ConversationBufferMemory()
# For long conversations (summarize old messages)
from langchain.memory import ConversationSummaryMemory
memory = ConversationSummaryMemory(llm=llm)
# For sliding window (last N messages)
from langchain.memory import ConversationBufferWindowMemory
memory = ConversationBufferWindowMemory(k=5)
# For entity tracking
from langchain.memory import ConversationEntityMemory
memory = ConversationEntityMemory(llm=llm)
# For semantic retrieval of relevant history
from langchain.memory import VectorStoreRetrieverMemory
memory = VectorStoreRetrieverMemory(retriever=retriever)
from langchain.callbacks.base import BaseCallbackHandler
class CustomCallbackHandler(BaseCallbackHandler):
def on_llm_start(self, serialized, prompts, **kwargs):
print(f"LLM started with prompts: {prompts}")
def on_llm_end(self, response, **kwargs):
print(f"LLM ended with response: {response}")
def on_llm_error(self, error, **kwargs):
print(f"LLM error: {error}")
def on_chain_start(self, serialized, inputs, **kwargs):
print(f"Chain started with inputs: {inputs}")
def on_agent_action(self, action, **kwargs):
print(f"Agent taking action: {action}")
# Use callback
agent.run("query", callbacks=[CustomCallbackHandler()])
import pytest
from unittest.mock import Mock
def test_agent_tool_selection():
# Mock LLM to return specific tool selection
mock_llm = Mock()
mock_llm.predict.return_value = "Action: search_database\nAction Input: test query"
agent = initialize_agent(tools, mock_llm, agent=AgentType.ZERO_SHOT_REACT_DESCRIPTION)
result = agent.run("test query")
# Verify correct tool was selected
assert "search_database" in str(mock_llm.predict.call_args)
def test_memory_persistence():
memory = ConversationBufferMemory()
memory.save_context({"input": "Hi"}, {"output": "Hello!"})
assert "Hi" in memory.load_memory_variables({})['history']
assert "Hello!" in memory.load_memory_variables({})['history']
from langchain.cache import InMemoryCache
import langchain
langchain.llm_cache = InMemoryCache()
# Process multiple documents in parallel
from langchain.document_loaders import DirectoryLoader
from concurrent.futures import ThreadPoolExecutor
loader = DirectoryLoader('./docs')
docs = loader.load()
def process_doc(doc):
return text_splitter.split_documents([doc])
with ThreadPoolExecutor(max_workers=4) as executor:
split_docs = list(executor.map(process_doc, docs))
from langchain.callbacks.streaming_stdout import StreamingStdOutCallbackHandler
llm = OpenAI(streaming=True, callbacks=[StreamingStdOutCallbackHandler()])
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