labarchive-integration
Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with Protocols.io/Jupyter/REDCap, for programmatic ELN workflows.
dependency-upgrade
Manage major dependency version upgrades with compatibility analysis, staged rollout, and comprehensive testing. Use when upgrading framework versions, updating major dependencies, or managing breaking changes in libraries.
Full skill instructions
Master major dependency version upgrades, compatibility analysis, staged upgrade strategies, and comprehensive testing approaches.
MAJOR.MINOR.PATCH (e.g., 2.3.1)
MAJOR: Breaking changes
MINOR: New features, backward compatible
PATCH: Bug fixes, backward compatible
^2.3.1 = >=2.3.1 <3.0.0 (minor updates)
~2.3.1 = >=2.3.1 <2.4.0 (patch updates)
2.3.1 = exact version
# npm
npm outdated
npm audit
npm audit fix
# yarn
yarn outdated
yarn audit
# Check for major updates
npx npm-check-updates
npx npm-check-updates -u # Update package.json
# See why a package is installed
npm ls package-name
yarn why package-name
# Find duplicate packages
npm dedupe
yarn dedupe
# Visualize dependencies
npx madge --image graph.png src/
// compatibility-matrix.js
const compatibilityMatrix = {
'react': {
'16.x': {
'react-dom': '^16.0.0',
'react-router-dom': '^5.0.0',
'@testing-library/react': '^11.0.0'
},
'17.x': {
'react-dom': '^17.0.0',
'react-router-dom': '^5.0.0 || ^6.0.0',
'@testing-library/react': '^12.0.0'
},
'18.x': {
'react-dom': '^18.0.0',
'react-router-dom': '^6.0.0',
'@testing-library/react': '^13.0.0'
}
}
};
function checkCompatibility(packages) {
// Validate package versions against matrix
}
# 1. Identify current versions
npm list --depth=0
# 2. Check for breaking changes
# Read CHANGELOG.md and MIGRATION.md
# 3. Create upgrade plan
echo "Upgrade order:
1. TypeScript
2. React
3. React Router
4. Testing libraries
5. Build tools" > UPGRADE_PLAN.md
# Don't upgrade everything at once!
# Step 1: Update TypeScript
npm install typescript@latest
# Test
npm run test
npm run build
# Step 2: Update React (one major version at a time)
npm install react@17 react-dom@17
# Test again
npm run test
# Step 3: Continue with other packages
npm install react-router-dom@6
# And so on...
// tests/compatibility.test.js
describe('Dependency Compatibility', () => {
it('should have compatible React versions', () => {
const reactVersion = require('react/package.json').version;
const reactDomVersion = require('react-dom/package.json').version;
expect(reactVersion).toBe(reactDomVersion);
});
it('should not have peer dependency warnings', () => {
// Run npm ls and check for warnings
});
});
# Use changelog parsers
npx changelog-parser react 16.0.0 17.0.0
# Or manually check
curl https://raw.githubusercontent.com/facebook/react/main/CHANGELOG.md
# React upgrade codemods
npx react-codeshift <transform> <path>
# Example: Update lifecycle methods
npx react-codeshift \
--parser tsx \
--transform react-codeshift/transforms/rename-unsafe-lifecycles.js \
src/
// migration-script.js
const fs = require('fs');
const glob = require('glob');
glob('src/**/*.tsx', (err, files) => {
files.forEach(file => {
let content = fs.readFileSync(file, 'utf8');
// Replace old API with new API
content = content.replace(
/componentWillMount/g,
'UNSAFE_componentWillMount'
);
// Update imports
content = content.replace(
/import { Component } from 'react'/g,
"import React, { Component } from 'react'"
);
fs.writeFileSync(file, content);
});
});
// Ensure tests pass before and after upgrade
npm run test
// Update test utilities if needed
npm install @testing-library/react@latest
// tests/integration/app.test.js
describe('App Integration', () => {
it('should render without crashing', () => {
render(<App />);
});
it('should handle navigation', () => {
const { getByText } = render(<App />);
fireEvent.click(getByText('Navigate'));
expect(screen.getByText('New Page')).toBeInTheDocument();
});
});
// visual-regression.test.js
describe('Visual Regression', () => {
it('should match snapshot', () => {
const { container } = render(<App />);
expect(container.firstChild).toMatchSnapshot();
});
});
// cypress/e2e/app.cy.js
describe('E2E Tests', () => {
it('should complete user flow', () => {
cy.visit('/');
cy.get('[data-testid="login"]').click();
cy.get('input[name="email"]').type('[email protected]');
cy.get('button[type="submit"]').click();
cy.url().should('include', '/dashboard');
});
});
// renovate.json
{
"extends": ["config:base"],
"packageRules": [
{
"matchUpdateTypes": ["minor", "patch"],
"automerge": true
},
{
"matchUpdateTypes": ["major"],
"automerge": false,
"labels": ["major-update"]
}
],
"schedule": ["before 3am on Monday"],
"timezone": "America/New_York"
}
# .github/dependabot.yml
version: 2
updates:
- package-ecosystem: "npm"
directory: "/"
schedule:
interval: "weekly"
open-pull-requests-limit: 5
reviewers:
- "team-leads"
commit-message:
prefix: "chore"
include: "scope"
// rollback.sh
#!/bin/bash
# Save current state
git stash
git checkout -b upgrade-branch
# Attempt upgrade
npm install package@latest
# Run tests
if npm run test; then
echo "Upgrade successful"
git add package.json package-lock.json
git commit -m "chore: upgrade package"
else
echo "Upgrade failed, rolling back"
git checkout main
git branch -D upgrade-branch
npm install # Restore from package-lock.json
fi
# npm
npm install --package-lock-only # Update lock file only
npm ci # Clean install from lock file
# yarn
yarn install --frozen-lockfile # CI mode
yarn upgrade-interactive # Interactive upgrades
# npm 7+: strict peer dependencies
npm install --legacy-peer-deps # Ignore peer deps
# npm 8+: override peer dependencies
npm install --force
# Update all workspace packages
npm install --workspaces
# Update specific workspace
npm install package@latest --workspace=packages/app
Pre-Upgrade:
- [ ] Review current dependency versions
- [ ] Read changelogs for breaking changes
- [ ] Create feature branch
- [ ] Backup current state (git tag)
- [ ] Run full test suite (baseline)
During Upgrade:
- [ ] Upgrade one dependency at a time
- [ ] Update peer dependencies
- [ ] Fix TypeScript errors
- [ ] Update tests if needed
- [ ] Run test suite after each upgrade
- [ ] Check bundle size impact
Post-Upgrade:
- [ ] Full regression testing
- [ ] Performance testing
- [ ] Update documentation
- [ ] Deploy to staging
- [ ] Monitor for errors
- [ ] Deploy to production
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