labarchive-integration
Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with Protocols.io/Jupyter/REDCap, for programmatic ELN workflows.
api-design-principles
Master REST and GraphQL API design principles to build intuitive, scalable, and maintainable APIs that delight developers. Use when designing new APIs, reviewing API specifications, or establishing API design standards.
Full skill instructions
Master REST and GraphQL API design principles to build intuitive, scalable, and maintainable APIs that delight developers and stand the test of time.
Resource-Oriented Architecture
HTTP Methods Semantics:
GET: Retrieve resources (idempotent, safe)POST: Create new resourcesPUT: Replace entire resource (idempotent)PATCH: Partial resource updatesDELETE: Remove resources (idempotent)Schema-First Development
Query Structure:
URL Versioning:
/api/v1/users
/api/v2/users
Header Versioning:
Accept: application/vnd.api+json; version=1
Query Parameter Versioning:
/api/users?version=1
# Good: Resource-oriented endpoints
GET /api/users # List users (with pagination)
POST /api/users # Create user
GET /api/users/{id} # Get specific user
PUT /api/users/{id} # Replace user
PATCH /api/users/{id} # Update user fields
DELETE /api/users/{id} # Delete user
# Nested resources
GET /api/users/{id}/orders # Get user's orders
POST /api/users/{id}/orders # Create order for user
# Bad: Action-oriented endpoints (avoid)
POST /api/createUser
POST /api/getUserById
POST /api/deleteUser
from typing import List, Optional
from pydantic import BaseModel, Field
class PaginationParams(BaseModel):
page: int = Field(1, ge=1, description="Page number")
page_size: int = Field(20, ge=1, le=100, description="Items per page")
class FilterParams(BaseModel):
status: Optional[str] = None
created_after: Optional[str] = None
search: Optional[str] = None
class PaginatedResponse(BaseModel):
items: List[dict]
total: int
page: int
page_size: int
pages: int
@property
def has_next(self) -> bool:
return self.page < self.pages
@property
def has_prev(self) -> bool:
return self.page > 1
# FastAPI endpoint example
from fastapi import FastAPI, Query, Depends
app = FastAPI()
@app.get("/api/users", response_model=PaginatedResponse)
async def list_users(
page: int = Query(1, ge=1),
page_size: int = Query(20, ge=1, le=100),
status: Optional[str] = Query(None),
search: Optional[str] = Query(None)
):
# Apply filters
query = build_query(status=status, search=search)
# Count total
total = await count_users(query)
# Fetch page
offset = (page - 1) * page_size
users = await fetch_users(query, limit=page_size, offset=offset)
return PaginatedResponse(
items=users,
total=total,
page=page,
page_size=page_size,
pages=(total + page_size - 1) // page_size
)
from fastapi import HTTPException, status
from pydantic import BaseModel
class ErrorResponse(BaseModel):
error: str
message: str
details: Optional[dict] = None
timestamp: str
path: str
class ValidationErrorDetail(BaseModel):
field: str
message: str
value: Any
# Consistent error responses
STATUS_CODES = {
"success": 200,
"created": 201,
"no_content": 204,
"bad_request": 400,
"unauthorized": 401,
"forbidden": 403,
"not_found": 404,
"conflict": 409,
"unprocessable": 422,
"internal_error": 500
}
def raise_not_found(resource: str, id: str):
raise HTTPException(
status_code=status.HTTP_404_NOT_FOUND,
detail={
"error": "NotFound",
"message": f"{resource} not found",
"details": {"id": id}
}
)
def raise_validation_error(errors: List[ValidationErrorDetail]):
raise HTTPException(
status_code=status.HTTP_422_UNPROCESSABLE_ENTITY,
detail={
"error": "ValidationError",
"message": "Request validation failed",
"details": {"errors": [e.dict() for e in errors]}
}
)
# Example usage
@app.get("/api/users/{user_id}")
async def get_user(user_id: str):
user = await fetch_user(user_id)
if not user:
raise_not_found("User", user_id)
return user
class UserResponse(BaseModel):
id: str
name: str
email: str
_links: dict
@classmethod
def from_user(cls, user: User, base_url: str):
return cls(
id=user.id,
name=user.name,
email=user.email,
_links={
"self": {"href": f"{base_url}/api/users/{user.id}"},
"orders": {"href": f"{base_url}/api/users/{user.id}/orders"},
"update": {
"href": f"{base_url}/api/users/{user.id}",
"method": "PATCH"
},
"delete": {
"href": f"{base_url}/api/users/{user.id}",
"method": "DELETE"
}
}
)
# schema.graphql
# Clear type definitions
type User {
id: ID!
email: String!
name: String!
createdAt: DateTime!
# Relationships
orders(
first: Int = 20
after: String
status: OrderStatus
): OrderConnection!
profile: UserProfile
}
type Order {
id: ID!
status: OrderStatus!
total: Money!
items: [OrderItem!]!
createdAt: DateTime!
# Back-reference
user: User!
}
# Pagination pattern (Relay-style)
type OrderConnection {
edges: [OrderEdge!]!
pageInfo: PageInfo!
totalCount: Int!
}
type OrderEdge {
node: Order!
cursor: String!
}
type PageInfo {
hasNextPage: Boolean!
hasPreviousPage: Boolean!
startCursor: String
endCursor: String
}
# Enums for type safety
enum OrderStatus {
PENDING
CONFIRMED
SHIPPED
DELIVERED
CANCELLED
}
# Custom scalars
scalar DateTime
scalar Money
# Query root
type Query {
user(id: ID!): User
users(
first: Int = 20
after: String
search: String
): UserConnection!
order(id: ID!): Order
}
# Mutation root
type Mutation {
createUser(input: CreateUserInput!): CreateUserPayload!
updateUser(input: UpdateUserInput!): UpdateUserPayload!
deleteUser(id: ID!): DeleteUserPayload!
createOrder(input: CreateOrderInput!): CreateOrderPayload!
}
# Input types for mutations
input CreateUserInput {
email: String!
name: String!
password: String!
}
# Payload types for mutations
type CreateUserPayload {
user: User
errors: [Error!]
}
type Error {
field: String
message: String!
}
from typing import Optional, List
from ariadne import QueryType, MutationType, ObjectType
from dataclasses import dataclass
query = QueryType()
mutation = MutationType()
user_type = ObjectType("User")
@query.field("user")
async def resolve_user(obj, info, id: str) -> Optional[dict]:
"""Resolve single user by ID."""
return await fetch_user_by_id(id)
@query.field("users")
async def resolve_users(
obj,
info,
first: int = 20,
after: Optional[str] = None,
search: Optional[str] = None
) -> dict:
"""Resolve paginated user list."""
# Decode cursor
offset = decode_cursor(after) if after else 0
# Fetch users
users = await fetch_users(
limit=first + 1, # Fetch one extra to check hasNextPage
offset=offset,
search=search
)
# Pagination
has_next = len(users) > first
if has_next:
users = users[:first]
edges = [
{
"node": user,
"cursor": encode_cursor(offset + i)
}
for i, user in enumerate(users)
]
return {
"edges": edges,
"pageInfo": {
"hasNextPage": has_next,
"hasPreviousPage": offset > 0,
"startCursor": edges[0]["cursor"] if edges else None,
"endCursor": edges[-1]["cursor"] if edges else None
},
"totalCount": await count_users(search=search)
}
@user_type.field("orders")
async def resolve_user_orders(user: dict, info, first: int = 20) -> dict:
"""Resolve user's orders (N+1 prevention with DataLoader)."""
# Use DataLoader to batch requests
loader = info.context["loaders"]["orders_by_user"]
orders = await loader.load(user["id"])
return paginate_orders(orders, first)
@mutation.field("createUser")
async def resolve_create_user(obj, info, input: dict) -> dict:
"""Create new user."""
try:
# Validate input
validate_user_input(input)
# Create user
user = await create_user(
email=input["email"],
name=input["name"],
password=hash_password(input["password"])
)
return {
"user": user,
"errors": []
}
except ValidationError as e:
return {
"user": None,
"errors": [{"field": e.field, "message": e.message}]
}
from aiodataloader import DataLoader
from typing import List, Optional
class UserLoader(DataLoader):
"""Batch load users by ID."""
async def batch_load_fn(self, user_ids: List[str]) -> List[Optional[dict]]:
"""Load multiple users in single query."""
users = await fetch_users_by_ids(user_ids)
# Map results back to input order
user_map = {user["id"]: user for user in users}
return [user_map.get(user_id) for user_id in user_ids]
class OrdersByUserLoader(DataLoader):
"""Batch load orders by user ID."""
async def batch_load_fn(self, user_ids: List[str]) -> List[List[dict]]:
"""Load orders for multiple users in single query."""
orders = await fetch_orders_by_user_ids(user_ids)
# Group orders by user_id
orders_by_user = {}
for order in orders:
user_id = order["user_id"]
if user_id not in orders_by_user:
orders_by_user[user_id] = []
orders_by_user[user_id].append(order)
# Return in input order
return [orders_by_user.get(user_id, []) for user_id in user_ids]
# Context setup
def create_context():
return {
"loaders": {
"user": UserLoader(),
"orders_by_user": OrdersByUserLoader()
}
}
/users, not /user)@deprecated directive for gradual migrationElectronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with Protocols.io/Jupyter/REDCap, for programmatic ELN workflows.
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