environment-setup-guide
Guide developers through setting up development environments with proper tools, dependencies, and configurations
openevidence-sdk-patterns
OpenEvidence SDK patterns and best practices for clinical AI integration. Use when implementing advanced SDK features, optimizing API usage, or following clinical decision support best practices. Trigger with phrases like "openevidence patterns", "openevidence best practices", "openevidence sdk",...
Full skill instructions
Best practices and design patterns for building production clinical decision support with OpenEvidence.
openevidence-install-auth setup// src/openevidence/client-factory.ts
import { OpenEvidenceClient } from '@openevidence/sdk';
export interface OpenEvidenceConfig {
apiKey: string;
orgId: string;
baseUrl?: string;
timeout?: number;
retries?: number;
}
export class OpenEvidenceClientFactory {
private static instance: OpenEvidenceClient;
private static config: OpenEvidenceConfig;
static configure(config: OpenEvidenceConfig): void {
this.config = config;
this.instance = null!; // Reset on reconfigure
}
static getClient(): OpenEvidenceClient {
if (!this.instance) {
if (!this.config) {
throw new Error('OpenEvidence client not configured. Call configure() first.');
}
this.instance = new OpenEvidenceClient(this.config);
}
return this.instance;
}
// For testing
static setClient(client: OpenEvidenceClient): void {
this.instance = client;
}
}
// src/openevidence/types.ts
export type ClinicalSpecialty =
| 'internal-medicine'
| 'emergency-medicine'
| 'cardiology'
| 'oncology'
| 'neurology'
| 'pediatrics'
| 'psychiatry'
| 'surgery'
| 'family-medicine'
| 'pharmacology';
export type QueryUrgency = 'stat' | 'urgent' | 'routine' | 'research';
export interface ClinicalContext {
specialty: ClinicalSpecialty;
urgency: QueryUrgency;
patientAge?: number;
patientSex?: 'male' | 'female' | 'other';
relevantConditions?: string[];
currentMedications?: string[];
}
export interface QueryOptions {
maxCitations?: number;
includeGuidelines?: boolean;
includeDrugInfo?: boolean;
preferredSources?: string[];
}
export interface TypedClinicalQuery {
question: string;
context: ClinicalContext;
options?: QueryOptions;
}
// src/openevidence/query-builder.ts
import { TypedClinicalQuery, ClinicalContext, QueryOptions } from './types';
export class ClinicalQueryBuilder {
private query: Partial<TypedClinicalQuery> = {};
question(q: string): this {
this.query.question = q;
return this;
}
specialty(s: ClinicalContext['specialty']): this {
this.query.context = { ...this.query.context, specialty: s } as ClinicalContext;
return this;
}
urgency(u: ClinicalContext['urgency']): this {
this.query.context = { ...this.query.context, urgency: u } as ClinicalContext;
return this;
}
withPatient(age: number, sex: 'male' | 'female' | 'other'): this {
this.query.context = {
...this.query.context,
patientAge: age,
patientSex: sex,
} as ClinicalContext;
return this;
}
withConditions(conditions: string[]): this {
this.query.context = {
...this.query.context,
relevantConditions: conditions,
} as ClinicalContext;
return this;
}
withMedications(meds: string[]): this {
this.query.context = {
...this.query.context,
currentMedications: meds,
} as ClinicalContext;
return this;
}
maxCitations(n: number): this {
this.query.options = { ...this.query.options, maxCitations: n };
return this;
}
includeGuidelines(): this {
this.query.options = { ...this.query.options, includeGuidelines: true };
return this;
}
build(): TypedClinicalQuery {
if (!this.query.question) throw new Error('Question is required');
if (!this.query.context?.specialty) throw new Error('Specialty is required');
if (!this.query.context?.urgency) throw new Error('Urgency is required');
return this.query as TypedClinicalQuery;
}
}
// Usage
const query = new ClinicalQueryBuilder()
.question('What is the recommended statin dosing for secondary prevention?')
.specialty('cardiology')
.urgency('routine')
.withPatient(65, 'male')
.withConditions(['prior MI', 'hyperlipidemia'])
.includeGuidelines()
.maxCitations(5)
.build();
// src/openevidence/response-transformer.ts
interface RawOpenEvidenceResponse {
answer: string;
citations: any[];
confidence: number;
raw_data: any;
}
export interface FormattedClinicalAnswer {
summary: string;
detailedAnswer: string;
keyPoints: string[];
evidence: {
source: string;
strength: 'high' | 'moderate' | 'low';
year: number;
}[];
confidence: {
score: number;
level: 'high' | 'moderate' | 'low';
};
disclaimer: string;
}
export function transformResponse(raw: RawOpenEvidenceResponse): FormattedClinicalAnswer {
const keyPoints = extractKeyPoints(raw.answer);
return {
summary: raw.answer.split('.')[0] + '.',
detailedAnswer: raw.answer,
keyPoints,
evidence: raw.citations.map(c => ({
source: c.source,
strength: determineEvidenceStrength(c),
year: c.year,
})),
confidence: {
score: raw.confidence,
level: raw.confidence > 0.9 ? 'high' : raw.confidence > 0.7 ? 'moderate' : 'low',
},
disclaimer: 'Clinical answers are for informational purposes. Always verify with current guidelines.',
};
}
function extractKeyPoints(answer: string): string[] {
// Extract bullet points or numbered items from the answer
const lines = answer.split('\n');
return lines
.filter(l => /^[-•*\d]/.test(l.trim()))
.map(l => l.replace(/^[-•*\d.)\]]+\s*/, '').trim())
.filter(l => l.length > 0);
}
function determineEvidenceStrength(citation: any): 'high' | 'moderate' | 'low' {
const highImpactSources = ['NEJM', 'JAMA', 'Lancet', 'BMJ', 'NCCN'];
if (highImpactSources.some(s => citation.source?.includes(s))) return 'high';
if (citation.year >= new Date().getFullYear() - 2) return 'moderate';
return 'low';
}
// src/openevidence/cache.ts
import { createHash } from 'crypto';
interface CacheEntry<T> {
data: T;
timestamp: number;
ttl: number;
}
export class ClinicalQueryCache {
private cache = new Map<string, CacheEntry<any>>();
private defaultTTL = 3600000; // 1 hour for clinical data
private generateKey(query: any): string {
const normalized = JSON.stringify(query, Object.keys(query).sort());
return createHash('sha256').update(normalized).digest('hex');
}
get<T>(query: any): T | null {
const key = this.generateKey(query);
const entry = this.cache.get(key);
if (!entry) return null;
if (Date.now() - entry.timestamp > entry.ttl) {
this.cache.delete(key);
return null;
}
return entry.data as T;
}
set<T>(query: any, data: T, ttl?: number): void {
const key = this.generateKey(query);
this.cache.set(key, {
data,
timestamp: Date.now(),
ttl: ttl || this.defaultTTL,
});
}
invalidate(query: any): void {
const key = this.generateKey(query);
this.cache.delete(key);
}
clear(): void {
this.cache.clear();
}
}
| Pattern | Use Case | Benefit |
|---|---|---|
| Singleton | Single client instance | Memory efficiency |
| Builder | Complex queries | Type safety, readability |
| Transformer | Response normalization | Consistent UI layer |
| Cache | Repeated queries | Reduced API calls, latency |
// src/services/clinical-evidence.ts
import { OpenEvidenceClientFactory } from '../openevidence/client-factory';
import { ClinicalQueryBuilder } from '../openevidence/query-builder';
import { transformResponse, FormattedClinicalAnswer } from '../openevidence/response-transformer';
import { ClinicalQueryCache } from '../openevidence/cache';
const cache = new ClinicalQueryCache();
export async function getClinicalEvidence(
question: string,
specialty: string,
options?: { useCache?: boolean }
): Promise<FormattedClinicalAnswer> {
const query = new ClinicalQueryBuilder()
.question(question)
.specialty(specialty as any)
.urgency('routine')
.includeGuidelines()
.build();
// Check cache first
if (options?.useCache !== false) {
const cached = cache.get<FormattedClinicalAnswer>(query);
if (cached) return cached;
}
// Query API
const client = OpenEvidenceClientFactory.getClient();
const response = await client.query(query);
// Transform and cache
const formatted = transformResponse(response);
cache.set(query, formatted);
return formatted;
}
For core clinical query workflow, see openevidence-core-workflow-a.
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