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PlantGeneAnn-v2-Angiospermae
qzzhang/PlantGeneAnn-v2-Angiospermae
PlantGeneAnn-v2-Angiospermae is a machine learning model from qzzhang. Use it for the machine learning task on the model card, and read the license before you ship it in a product. The card lists the license as mit.
PlantGeneAnn (Plant Gene Annotator) is a tool for accurate ab initio protein-coding gene structure annotation in plant genomes. It automatically predicts nucleotide-level gene states on both genomic strands using a ge…
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At a glance
- License
- mit
- Model type
- caduceus_ph
- Access
- Public
- Created
- Aug 25, 2026
- Updated
- Oct 16, 2026
- SHA
- 8bfa88ac
Model card
From the Hugging Face model README
PlantGeneAnn
PlantGeneAnn (Plant Gene Annotator) is a tool for accurate ab initio protein-coding gene structure annotation in plant genomes. It automatically predicts nucleotide-level gene states on both genomic strands using a genome foundation model (GFM) and converts these predictions into biologically valid gene models through semi-Markov model (SMM) decoding. PlantGeneAnn-v2-Angiospermae is the pretrained model tailored for flowering plants.
Developed by: hu-lab
Model and Pipeline Sources
- Model Checkpoint: PlantGeneAnn-v2-Angiospermae
- GitHub: https://github.com/qzzhang0131/PlantGeneAnn (Full annotation pipeline)
BibTeX Entry and Citation Info
@article{zhang2026plantgeneann,
title={PlantGeneAnn: a high-accuracy ab initio plant gene annotation tool fine-tuned from a genome foundation model},
author={Zhang, Qizhe and Zhang, Zhengyang and Lin, Kepeng and Wang, Jing and Deng, Kaixuan and Xu, Wei and Yang, Qing-Yong and Hu, Xuehai},
journal={bioRxiv},
year={2026},
doi={10.64898/2026.06.25.733695},
url={https://www.biorxiv.org/content/10.64898/2026.06.25.733695v2}
}
- Type
- caduceus_ph
- License
- mit
- Created
- Aug 25, 2026
- Updated
- Oct 16, 2026