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prism-oncology/novae-scConcept-multi-species
novae-scConcept-multi-species is a machine learning model from prism-oncology. Use it for the machine learning task on the model card, and read the license before you ship it in a product.
New novae model that uses scConcept embeddings as node features (see tutorial here).
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From the Hugging Face model README
New novae model that uses scConcept embeddings as node features (see tutorial here).
See our GitHub repository or our package documentation.
Our article is published in Nature Methods. You can cite Novae as below:
Blampey, Q., Benkirane, H., Bercovici, N. et al. Novae: a graph-based foundation model for spatial transcriptomics data.
Nat Methods (2025). https://doi.org/10.1038/s41592-025-02899-6