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mevol/Bioformer8L-ProteinStructure-NER-v0.1_quantized
Bioformer8L-ProteinStructure-NER-v0.1_quantized is a token classification model from mevol. Use it when you need labels on individual words, such as names. It is set up for transformers. The card lists the license as mit.
Downloads · 30 days
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From the Hugging Face model README
| Feature | Description |
|---|---|
| Name | Bioformer8L-ProteinStructure-NER-v0.1_quantized |
| Default Pipeline | transformer, ner |
| Components | transformer, ner |
| Vectors | 0 keys, 0 unique vectors (0 dimensions) |
| Sources | n/a |
| License | n/a |
| Author | Melanie Vollmar |
| Component | Labels |
|---|---|
ner | "bond_interaction", "chemical", "complex_assembly", "evidence", "experimental_method", "gene", "mutant", "oligomeric_state", "protein", "protein_state", "protein_type", "ptm", "residue_name", "residue_name_number", "residue_number", "residue_range", "site", "species", "structure_element", "taxonomy_domain" |
| entity type | precision | recall | F1 | sample number |
|---|---|---|---|---|
| "bond_interaction" | 0.94 | 0.89 | 0.91 | 40 |
| "chemical" | 0.85 | 0.91 | 0.88 | 597 |
| "complex_assembly" | 0.86 | 0.89 | 0.87 | 183 |
| "evidence" | 0.82 | 0.89 | 0.85 | 400 |
| "experimental_method" | 0.86 | 0.84 | 0.85 | 307 |
| "gene" | 0.73 | 0.86 | 0.79 | 26 |
| "mutant" | 0.88 | 0.93 | 0.90 | 215 |
| "oligomeric_state" | 0.91 | 0.96 | 0.94 | 117 |
| "protein" | 0.90 | 0.94 | 0.92 | 758 |
| "protein_state" | 0.81 | 0.86 | 0.83 | 543 |
| "protein_type" | 0.85 | 0.85 | 0.85 | 277 |
| "ptm" | 0.66 | 0.70 | 0.68 | 34 |
| "residue_name" | 0.93 | 0.92 | 0.92 | 70 |
| "residue_name_number" | 0.95 | 0.95 | 0.95 | 257 |
| "residue_number" | 0.64 | 0.88 | 0.74 | 44 |
| "residue_range" | 0.84 | 0.76 | 0.80 | 31 |
| "site" | 0.86 | 0.89 | 0.88 | 247 |
| "species" | 0.95 | 0.97 | 0.96 | 76 |
| "structure_element" | 0.90 | 0.92 | 0.91 | 749 |
| "taxonomy_domain" | 0.99 | 0.98 | 0.98 | 82 |