CRAFT_SciBERT_NER

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CRAFT_SciBERT_NER

This model is a fine-tuned version of allenai/scibert_scivocab_uncased on the None dataset. It achieves the following results on the evaluation set:

• Loss: 0.1143

• Seqeval classification report: precision recall f1-score support

   CHEBI       0.74      0.70      0.72       457
      CL       0.82      0.75      0.78      1099
     GGP       0.92      0.93      0.93      2232
      GO       0.78      0.84      0.81      2508
      SO       0.83      0.81      0.82      1365
   Taxon       0.99      0.99      0.99     87655
  

  micro avg 0.98 0.98 0.98 95316 macro avg 0.85 0.84 0.84 95316 weighted avg 0.98 0.98 0.98 95316

Model description

More information needed

Intended uses & limitations

More information needed

Training and evaluation data

More information needed

Training procedure

Training hyperparameters

The following hyperparameters were used during training:

• learning_rate: 2e-05
• train_batch_size: 16
• eval_batch_size: 16
• seed: 42
• gradient_accumulation_steps: 2
• total_train_batch_size: 32
• optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
• lr_scheduler_type: linear
• num_epochs: 3

Training results

   CHEBI       0.66      0.69      0.67       457
      CL       0.83      0.69      0.75      1099
     GGP       0.89      0.93      0.91      2232
      GO       0.76      0.85      0.80      2508
      SO       0.79      0.73      0.76      1365
   Taxon       0.99      0.99      0.99     87655

micro avg 0.97 0.97 0.97 95316 macro avg 0.82 0.81 0.81 95316 weighted avg 0.97 0.97 0.97 95316 | | 0.1263 | 2.0 | 695 | 0.1126 | precision recall f1-score support

   CHEBI       0.73      0.69      0.71       457
      CL       0.85      0.72      0.78      1099
     GGP       0.91      0.93      0.92      2232
      GO       0.74      0.87      0.80      2508
      SO       0.82      0.80      0.81      1365
   Taxon       0.99      0.99      0.99     87655

micro avg 0.97 0.97 0.97 95316 macro avg 0.84 0.83 0.83 95316 weighted avg 0.97 0.97 0.97 95316 | | 0.0326 | 3.0 | 1041 | 0.1143 | precision recall f1-score support

   CHEBI       0.74      0.70      0.72       457
      CL       0.82      0.75      0.78      1099
     GGP       0.92      0.93      0.93      2232
      GO       0.78      0.84      0.81      2508
      SO       0.83      0.81      0.82      1365
   Taxon       0.99      0.99      0.99     87655

micro avg 0.98 0.98 0.98 95316 macro avg 0.85 0.84 0.84 95316 weighted avg 0.98 0.98 0.98 95316 |

Framework versions

• Transformers 4.35.2
• Pytorch 2.1.0+cu121
• Datasets 2.15.0
• Tokenizers 0.15.0