ESMCrystal_t6_8M_v1

jaykmr/ESMCrystal_t6_8M_v1

ESMCrystal_t6_8M_v1 is a text classification model from jaykmr. Use it when you need a label for a piece of text. It is set up for transformers. The card lists the license as mit.

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7.8M

123 MB on disk

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Hugging Face

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.pt60.2 MB · 45%

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Model card

From the Hugging Face model README

Label Semantics:

Label 0: Non-crystallizable (Negative)

Label 1: Crystallizable (Positive)

Dataset

Model

ESMCrystal_t6_8M_v1

ESMCrystal_t6_8M_v1 is a state-of-the-art protein crystallization prediction model finetuned on esm2_t6_8M_UR50D, having 6 layers and 8M parameters with the size of approx. 31.4MB using transfer learning to predict whether an input protein sequence will crystallize or not.

Accuracy :

Dataset	Accuracy
DeepCrystal Test	0.7913593256059009
BCrystal test	0.7811975377728035
SP test	0.6962025316455697
TR test	0.8191699604743083

Comparision Table:

	Count	Positives	Negatives	TP	FP	FN	TN	Precision	Recall	F1	Accuracy	ROC	Mathew's Coefficient	PPV	NPV

Test	1898	898	1000	532	362	34	966	0.5950783	0.93992933	0.72876712	0.79091869	0.9467	0.611906376	0.5950783	0.966

BCrystal Test	1787	891	896	531	360	31	865	0.5959596	0.94483986	0.73090158	0.78119754	0.9396	0.604504011	0.5959596	0.96540179

SP Test	237	148	89	80	68	4	85	0.54054054	0.95238095	0.68965517	0.69620253	0.9328	0.501728679	0.54054054	0.95505618

TR Test	1012	374	638	207	167	16	622	0.55347594	0.92825112	0.69346734	0.81916996	0.9562	0.615341231	0.55347594	0.97492163