Downloads · 30 days
0
toxoplasma-pv-segmentation-cpsam-r5
einarolafsson/toxoplasma-pv-segmentation-cpsam-r5
toxoplasma-pv-segmentation-cpsam-r5 is a image segmentation model from einarolafsson. Use it for the image segmentation task on the model card, and read the license before you ship it in a product. It is set up for spacr. The card lists the license as mit.
Access
Public
Updated Oct 12, 2026
Repo size
1.2 GB
Likes
0
Public
Repo makeup
Click a slice to open those files.
Other1.2 GB · 100%
At a glance
- Task
- Image Segmentation
- Library
- spacr
- License
- mit
- Access
- Public
- Created
- Sep 18, 2026
- Updated
- Oct 12, 2026
- SHA
- 2cefad04
Model card
From the Hugging Face model README
Toxoplasma PV v2
About Toxoplasma PV v2
What it segments. Toxoplasma gondii parasitophorous vacuoles (PVs) in fluorescence images of infected host cells, with the parasite marked by DsRed or an anti-Toxoplasma stain.
Version. spaCR model-zoo key toxoplasma_pv_v2, training round 5 (weights cpsam_v2_toxo_r5). Status: Earlier version, kept so recorded runs reproduce. The default PV model in spaCR is toxoplasma_pv_v4.
Trained on. 556 curated fields from four lab PV screens and published-figure crops, including the 11 anchor wells.
Date. trained 2026-09-15
Links
- This model on Hugging Face: einarolafsson/toxoplasma-pv-segmentation-cpsam-r5
- Stock model it was tuned from: cpsam_v2
- spaCR: github.com/EinarOlafsson/spacr
Load it in spaCR. Set pathogen_model_name to toxoplasma_pv_v2; spaCR downloads and checks the weights on first use.
- Task
- Image Segmentation
- Library
- spacr
- License
- mit
- Created
- Sep 18, 2026
- Updated
- Oct 12, 2026