biobertpt-all-finetuned-ner

brunodorneles/biobertpt-all-finetuned-ner

biobertpt-all-finetuned-ner is a token classification model from brunodorneles. Use it when you need labels on individual words, such as names. It is set up for transformers.

should probably proofread and complete it, then remove this comment. --

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At a glance

Task: Token Classification
Library: transformers
Model type: bert
Access: Public
Created: Mar 2, 2022
Updated: Nov 3, 2021
SHA: 455b762a

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Model card

From the Hugging Face model README

biobertpt-all-finetuned-ner

This model is a fine-tuned version of pucpr/biobertpt-all on an unknown dataset. It achieves the following results on the evaluation set:

Loss: 2.3721
Precision: 0.0179
Recall: 0.0149
F1: 0.0163
Accuracy: 0.6790

Model description

More information needed

Intended uses & limitations

More information needed

Training and evaluation data

More information needed

Training procedure

Training hyperparameters

The following hyperparameters were used during training:

learning_rate: 2e-05
train_batch_size: 16
eval_batch_size: 16
seed: 42
optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
lr_scheduler_type: linear
num_epochs: 3

Training results

Training Loss	Epoch	Step	Validation Loss	Precision	Recall	F1	Accuracy
No log	1.0	1	2.7864	0.0091	0.0448	0.0152	0.3339
No log	2.0	2	2.5096	0.0097	0.0149	0.0118	0.6292
No log	3.0	3	2.3721	0.0179	0.0149	0.0163	0.6790

Framework versions

Transformers 4.12.0.dev0
Pytorch 1.9.1+cu102
Datasets 1.13.3
Tokenizers 0.10.3

Task: Token Classification
Library: transformers
Type: bert
Created: Mar 2, 2022
Updated: Nov 3, 2021