mistralmed

Model Card for Tonic/MistralMed

This is a medicine-focussed mistral fine tuned using keivalya/MedQuad-MedicalQnADataset

Model Details

Model Description

Trying to get better at medical Q & A

• Developed by: Tonic
• Shared by : Tonic
• Model type: Mistral Fine-Tune
• Language(s) (NLP): English
• License: MIT2.0
• Finetuned from model : mistralai/Mistral-7B-v0.1

Model Sources

• Repository: Tonic/mistralmed
• Code : github
• Demo : Tonic/MistralMed_Chat

Uses

This model can be used the same way you normally use mistral

Direct Use

This model can do better in medical question and answer scenarios.

Downstream Use

This model is intended to be further fine tuned.

Recommendations

• Do Not Use As Is
• Fine Tune This Model Further
• For Educational Purposes Only
• Benchmark your model usage
• Evaluate the model before use

Users (both direct and downstream) should be made aware of the risks, biases and limitations of the model. More information needed for further recommendations.

How to Get Started with the Model

Use the code below to get started with the model.

pseudolab/MistralMED_Chat

from transformers import AutoConfig, AutoTokenizer, AutoModelForSeq2SeqLM, AutoModelForCausalLM, MistralForCausalLM
from peft import PeftModel, PeftConfig
import torch
import gradio as gr
import random
from textwrap import wrap

def wrap_text(text, width=90):
    lines = text.split('\n')
    wrapped_lines = [textwrap.fill(line, width=width) for line in lines]
    wrapped_text = '\n'.join(wrapped_lines)
    return wrapped_text

def multimodal_prompt(user_input, system_prompt="You are an expert medical analyst:"):
    formatted_input = f"<s>[INST]{system_prompt} {user_input}[/INST]"

    encodeds = tokenizer(formatted_input, return_tensors="pt", add_special_tokens=False)
    model_inputs = encodeds.to(device)

    output = model.generate(
        **model_inputs,
        max_length=max_length,
        use_cache=True,
        early_stopping=True,
        bos_token_id=model.config.bos_token_id,
        eos_token_id=model.config.eos_token_id,
        pad_token_id=model.config.eos_token_id,
        temperature=0.1,
        do_sample=True
    )

    response_text = tokenizer.decode(output[0], skip_special_tokens=True)

    return response_text

device = "cuda" if torch.cuda.is_available() else "cpu"

base_model_id = "mistralai/Mistral-7B-v0.1"
model_directory = "Tonic/mistralmed"

tokenizer = AutoTokenizer.from_pretrained("mistralai/Mistral-7B-v0.1", trust_remote_code=True, padding_side="left")
tokenizer.pad_token = tokenizer.eos_token
tokenizer.padding_side = 'left'

peft_config = PeftConfig.from_pretrained("Tonic/mistralmed", token="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")
peft_model = MistralForCausalLM.from_pretrained("mistralai/Mistral-7B-v0.1", trust_remote_code=True)
peft_model = PeftModel.from_pretrained(peft_model, "Tonic/mistralmed", token="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")

class ChatBot:
    def __init__(self):
        self.history = []

    def predict(self, user_input, system_prompt="You are an expert medical analyst:"):
        formatted_input = f"<s>[INST]{system_prompt} {user_input}[/INST]"

        user_input_ids = tokenizer.encode(formatted_input, return_tensors="pt")

        response = peft_model.generate(input_ids=user_input_ids, max_length=512, pad_token_id=tokenizer.eos_token_id)

        response_text = tokenizer.decode(response[0], skip_special_tokens=True)
        return response_text

bot = ChatBot()

title = "👋🏻토닉의 미스트랄메드 채팅에 오신 것을 환영합니다🚀👋🏻Welcome to Tonic's MistralMed Chat🚀"
description = "이 공간을 사용하여 현재 모델을 테스트할 수 있습니다. [(Tonic/MistralMed)](https://huggingface.co/Tonic/MistralMed) 또는 이 공간을 복제하고 로컬 또는 🤗HuggingFace에서 사용할 수 있습니다. [Discord에서 함께 만들기 위해 Discord에 가입하십시오](https://discord.gg/VqTxc76K3u). You can use this Space to test out the current model [(Tonic/MistralMed)](https://huggingface.co/Tonic/MistralMed) or duplicate this Space and use it locally or on 🤗HuggingFace. [Join me on Discord to build together](https://discord.gg/VqTxc76K3u)."
examples = [["[Question:] What is the proper treatment for buccal herpes?", "You are a medicine and public health expert, you will receive a question, answer the question, and complete the answer"]]

iface = gr.Interface(
    fn=bot.predict,
    title=title,
    description=description,
    examples=examples,
    inputs=["text", "text"],
    outputs="text",
    theme="ParityError/Anime"
)

iface.launch()

Training Details

Training Data

MedQuad

Training Procedure

Dataset({
    features: ['qtype', 'Question', 'Answer'],
    num_rows: 16407
})

Preprocessing [optional]

MistralForCausalLM(
  (model): MistralModel(
    (embed_tokens): Embedding(32000, 4096)
    (layers): ModuleList(
      (0-31): 32 x MistralDecoderLayer(
        (self_attn): MistralAttention(
          (q_proj): Linear4bit(in_features=4096, out_features=4096, bias=False)
          (k_proj): Linear4bit(in_features=4096, out_features=1024, bias=False)
          (v_proj): Linear4bit(in_features=4096, out_features=1024, bias=False)
          (o_proj): Linear4bit(in_features=4096, out_features=4096, bias=False)
          (rotary_emb): MistralRotaryEmbedding()
        )
        (mlp): MistralMLP(
          (gate_proj): Linear4bit(in_features=4096, out_features=14336, bias=False)
          (up_proj): Linear4bit(in_features=4096, out_features=14336, bias=False)
          (down_proj): Linear4bit(in_features=14336, out_features=4096, bias=False)
          (act_fn): SiLUActivation()
        )
        (input_layernorm): MistralRMSNorm()
        (post_attention_layernorm): MistralRMSNorm()
      )
    )
    (norm): MistralRMSNorm()
  )
  (lm_head): Linear(in_features=4096, out_features=32000, bias=False)
)

Training Hyperparameters

• Training regime:

config = LoraConfig(
    r=8,
    lora_alpha=16,
    target_modules=[
        "q_proj",
        "k_proj",
        "v_proj",
        "o_proj",
        "gate_proj",
        "up_proj",
        "down_proj",
        "lm_head",
    ],
    bias="none",
    lora_dropout=0.05,  # Conventional
    task_type="CAUSAL_LM",
)

Speeds, Sizes, Times [optional]

• trainable params: 21260288 || all params: 3773331456 || trainable%: 0.5634354746703705
• TrainOutput(global_step=1000, training_loss=0.47226515007019043, metrics={'train_runtime': 3143.4141, 'train_samples_per_second': 2.545, 'train_steps_per_second': 0.318, 'total_flos': 1.75274075357184e+17, 'train_loss': 0.47226515007019043, 'epoch': 0.49})

Environmental Impact

Carbon emissions can be estimated using the Machine Learning Impact calculator presented in Lacoste et al. (2019).

• Hardware Type: A100
• Hours used: 1
• Cloud Provider: Google
• Compute Region: East1
• Carbon Emitted: 0.09

Training Results

[1000/1000 52:20, Epoch 0/1]

Model Architecture and Objective

PeftModelForCausalLM(
  (base_model): LoraModel(
    (model): MistralForCausalLM(
      (model): MistralModel(
        (embed_tokens): Embedding(32000, 4096)
        (layers): ModuleList(
          (0-31): 32 x MistralDecoderLayer(
            (self_attn): MistralAttention(
              (q_proj): Linear4bit(
                (lora_dropout): ModuleDict(
                  (default): Dropout(p=0.05, inplace=False)
                )
                (lora_A): ModuleDict(
                  (default): Linear(in_features=4096, out_features=8, bias=False)
                )
                (lora_B): ModuleDict(
                  (default): Linear(in_features=8, out_features=4096, bias=False)
                )
                (lora_embedding_A): ParameterDict()
                (lora_embedding_B): ParameterDict()
                (base_layer): Linear4bit(in_features=4096, out_features=4096, bias=False)
              )
              (k_proj): Linear4bit(
                (lora_dropout): ModuleDict(
                  (default): Dropout(p=0.05, inplace=False)
                )
                (lora_A): ModuleDict(
                  (default): Linear(in_features=4096, out_features=8, bias=False)
                )
                (lora_B): ModuleDict(
                  (default): Linear(in_features=8, out_features=1024, bias=False)
                )
                (lora_embedding_A): ParameterDict()
                (lora_embedding_B): ParameterDict()
                (base_layer): Linear4bit(in_features=4096, out_features=1024, bias=False)
              )
              (v_proj): Linear4bit(
                (lora_dropout): ModuleDict(
                  (default): Dropout(p=0.05, inplace=False)
                )
                (lora_A): ModuleDict(
                  (default): Linear(in_features=4096, out_features=8, bias=False)
                )
                (lora_B): ModuleDict(
                  (default): Linear(in_features=8, out_features=1024, bias=False)
                )
                (lora_embedding_A): ParameterDict()
                (lora_embedding_B): ParameterDict()
                (base_layer): Linear4bit(in_features=4096, out_features=1024, bias=False)
              )
              (o_proj): Linear4bit(
                (lora_dropout): ModuleDict(
                  (default): Dropout(p=0.05, inplace=False)
                )
                (lora_A): ModuleDict(
                  (default): Linear(in_features=4096, out_features=8, bias=False)
                )
                (lora_B): ModuleDict(
                  (default): Linear(in_features=8, out_features=4096, bias=False)
                )
                (lora_embedding_A): ParameterDict()
                (lora_embedding_B): ParameterDict()
                (base_layer): Linear4bit(in_features=4096, out_features=4096, bias=False)
              )
              (rotary_emb): MistralRotaryEmbedding()
            )
            (mlp): MistralMLP(
              (gate_proj): Linear4bit(
                (lora_dropout): ModuleDict(
                  (default): Dropout(p=0.05, inplace=False)
                )
                (lora_A): ModuleDict(
                  (default): Linear(in_features=4096, out_features=8, bias=False)
                )
                (lora_B): ModuleDict(
                  (default): Linear(in_features=8, out_features=14336, bias=False)
                )
                (lora_embedding_A): ParameterDict()
                (lora_embedding_B): ParameterDict()
                (base_layer): Linear4bit(in_features=4096, out_features=14336, bias=False)
              )
              (up_proj): Linear4bit(
                (lora_dropout): ModuleDict(
                  (default): Dropout(p=0.05, inplace=False)
                )
                (lora_A): ModuleDict(
                  (default): Linear(in_features=4096, out_features=8, bias=False)
                )
                (lora_B): ModuleDict(
                  (default): Linear(in_features=8, out_features=14336, bias=False)
                )
                (lora_embedding_A): ParameterDict()
                (lora_embedding_B): ParameterDict()
                (base_layer): Linear4bit(in_features=4096, out_features=14336, bias=False)
              )
              (down_proj): Linear4bit(
                (lora_dropout): ModuleDict(
                  (default): Dropout(p=0.05, inplace=False)
                )
                (lora_A): ModuleDict(
                  (default): Linear(in_features=14336, out_features=8, bias=False)
                )
                (lora_B): ModuleDict(
                  (default): Linear(in_features=8, out_features=4096, bias=False)
                )
                (lora_embedding_A): ParameterDict()
                (lora_embedding_B): ParameterDict()
                (base_layer): Linear4bit(in_features=14336, out_features=4096, bias=False)
              )
              (act_fn): SiLUActivation()
            )
            (input_layernorm): MistralRMSNorm()
            (post_attention_layernorm): MistralRMSNorm()
          )
        )
        (norm): MistralRMSNorm()
      )
      (lm_head): Linear(
        in_features=4096, out_features=32000, bias=False
        (lora_dropout): ModuleDict(
          (default): Dropout(p=0.05, inplace=False)
        )
        (lora_A): ModuleDict(
          (default): Linear(in_features=4096, out_features=8, bias=False)
        )
        (lora_B): ModuleDict(
          (default): Linear(in_features=8, out_features=32000, bias=False)
        )
        (lora_embedding_A): ParameterDict()
        (lora_embedding_B): ParameterDict()
      )
    )
  )
)

Hardware

A100

Model Card Authors [optional]

Tonic

Model Card Contact

Tonic

Training procedure

The following bitsandbytes quantization config was used during training:

• quant_method: bitsandbytes
• load_in_8bit: False
• load_in_4bit: True
• llm_int8_threshold: 6.0
• llm_int8_skip_modules: None
• llm_int8_enable_fp32_cpu_offload: False
• llm_int8_has_fp16_weight: False
• bnb_4bit_quant_type: nf4
• bnb_4bit_use_double_quant: True
• bnb_4bit_compute_dtype: bfloat16

Framework versions

• PEFT 0.6.0.dev0