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Model-AVIDa-hIL6_Interaction_prediction-35M
SaProtHub/Model-AVIDa-hIL6_Interaction_prediction-35M
Model-AVIDa-hIL6_Interaction_prediction-35M is a machine learning model from SaProtHub. Use it for the machine learning task on the model card, and read the license before you ship it in a product. It is set up for peft.
AVIDa-hIL6 is an antigen-variable domain of heavy chain of heavy chain antibody (VHH) interaction dataset produced from an alpaca immunized with the human interleukin-6 (IL-6) protein. This model is used to predict in…
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At a glance
- Library
- peft
- Access
- Public
- Created
- Jul 16, 2024
- Updated
- Oct 16, 2024
- SHA
- b26e44cc
Base models
Model card
From the Hugging Face model README
Base model: westlake-repl/SaProt_35M_AF2
Model Card for Model ID
<!-- Provide a quick summary of what the model is/does. -->AVIDa-hIL6 is an antigen-variable domain of heavy chain of heavy chain antibody (VHH) interaction dataset produced from an alpaca immunized with the human interleukin-6 (IL-6) protein. This model is used to predict interaction between AVIDa-hIL6 and IL-6 protein.
Task type
protein-protein pair classification
Dataset description
The dataset is from AVIDa-hIL6, which contains 573,891 antigen-VHH pairs with amino acid sequences.
Binary label represented by 1 for the binding pair and 0 for the non-binding pair.
Model input type
Amino acid sequence pair
Performance
test_acc: 0.99
LoRA config
lora_dropout: 0.0
lora_alpha: 16
target_modules: ["query", "key", "value", "intermediate.dense", "output.dense"]
modules_to_save: ["classifier"]
Training config
class: AdamW
betas: (0.9, 0.98)
weight_decay: 0.01
learning rate: 1e-4
epoch: 10
batch size: 280
precision: 16-mixed
- Library
- peft
- Created
- Jul 16, 2024
- Updated
- Oct 16, 2024