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BiomedNLP_BiomedBERT_base
Mardiyyah/BiomedNLP_BiomedBERT_base
BiomedNLP_BiomedBERT_base is a token classification model from Mardiyyah. Use it when you need labels on individual words, such as names. It is set up for transformers. The card lists the license as mit.
should probably proofread and complete it, then remove this comment. --
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At a glance
- Task
- Token Classification
- Library
- transformers
- License
- mit
- Model type
- bert
- Access
- Public
- Created
- Jan 27, 2026
- Updated
- Jan 27, 2026
- SHA
- e54d8802
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Base models
Model card
From the Hugging Face model README
<!-- This model card has been generated automatically according to the information the Trainer had access to. You
should probably proofread and complete it, then remove this comment. -->
CeLLaTe-AL-Testbase_adapted_tok
This model is a fine-tuned version of microsoft/BiomedNLP-BiomedBERT-base-uncased-abstract-fulltext on an unknown dataset. It achieves the following results on the evaluation set:
- Loss: 0.4629
- Precision: 0.6069
- Recall: 0.5631
- F1: 0.5842
- Accuracy: 0.9307
Model description
More information needed
Intended uses & limitations
More information needed
Training and evaluation data
More information needed
Training procedure
Training hyperparameters
The following hyperparameters were used during training:
- learning_rate: 2e-05
- train_batch_size: 16
- eval_batch_size: 16
- seed: 3407
- optimizer: Use OptimizerNames.ADAMW_TORCH with betas=(0.9,0.999) and epsilon=1e-08 and optimizer_args=No additional optimizer arguments
- lr_scheduler_type: linear
- lr_scheduler_warmup_ratio: 0.1
- num_epochs: 20
- mixed_precision_training: Native AMP
Training results
| Training Loss | Epoch | Step | Validation Loss | Precision | Recall | F1 | Accuracy |
|---|---|---|---|---|---|---|---|
| 1.0711 | 1.0 | 115 | 0.4380 | 0.2039 | 0.1800 | 0.1912 | 0.8599 |
| 0.2579 | 2.0 | 230 | 0.2830 | 0.4117 | 0.3991 | 0.4053 | 0.9112 |
| 0.1083 | 3.0 | 345 | 0.2841 | 0.5199 | 0.4894 | 0.5042 | 0.9222 |
| 0.0707 | 4.0 | 460 | 0.2899 | 0.5291 | 0.5481 | 0.5384 | 0.9240 |
| 0.0472 | 5.0 | 575 | 0.2954 | 0.5816 | 0.5354 | 0.5576 | 0.9297 |
| 0.0336 | 6.0 | 690 | 0.3135 | 0.5902 | 0.5354 | 0.5615 | 0.9296 |
| 0.0232 | 7.0 | 805 | 0.3596 | 0.6125 | 0.5419 | 0.5750 | 0.9299 |
| 0.0178 | 8.0 | 920 | 0.3412 | 0.5675 | 0.5903 | 0.5787 | 0.9285 |
| 0.0181 | 9.0 | 1035 | 0.3621 | 0.6100 | 0.5470 | 0.5768 | 0.9296 |
| 0.0132 | 10.0 | 1150 | 0.3638 | 0.5904 | 0.5733 | 0.5817 | 0.9302 |
| 0.0106 | 11.0 | 1265 | 0.4134 | 0.6078 | 0.5556 | 0.5805 | 0.9303 |
| 0.0088 | 12.0 | 1380 | 0.4197 | 0.6023 | 0.5579 | 0.5793 | 0.9297 |
| 0.0071 | 13.0 | 1495 | 0.4162 | 0.5947 | 0.5712 | 0.5828 | 0.9301 |
| 0.0067 | 14.0 | 1610 | 0.4196 | 0.6077 | 0.5518 | 0.5784 | 0.9305 |
| 0.005 | 15.0 | 1725 | 0.4391 | 0.5892 | 0.5661 | 0.5774 | 0.9295 |
| 0.0047 | 16.0 | 1840 | 0.4424 | 0.5872 | 0.5682 | 0.5775 | 0.9295 |
| 0.0042 | 17.0 | 1955 | 0.4632 | 0.5939 | 0.5539 | 0.5732 | 0.9293 |
| 0.0037 | 18.0 | 2070 | 0.4541 | 0.5971 | 0.5692 | 0.5828 | 0.9300 |
| 0.0041 | 19.0 | 2185 | 0.4611 | 0.6069 | 0.5631 | 0.5842 | 0.9307 |
| 0.0034 | 20.0 | 2300 | 0.4573 | 0.5991 | 0.5668 | 0.5825 | 0.9301 |
Framework versions
- Transformers 4.48.2
- Pytorch 2.4.1+cu121
- Datasets 3.0.2
- Tokenizers 0.21.0
- Task
- Token Classification
- Library
- transformers
- Type
- bert
- License
- mit
- Created
- Jan 27, 2026
- Updated
- Jan 27, 2026