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hest-tissue-seg
MahmoodLab/hest-tissue-seg
hest-tissue-seg is a machine learning model from MahmoodLab. Use it for the machine learning task on the model card, and read the license before you ship it in a product. The card lists the license as cc-by-nc-sa-4.0.
DeepLabV3 model finetuned on HEST-1k and Acrobat for IHC/H&E tissue segmentation.
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Updated Mar 17, 2025
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563 MB
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.ckpt486 MB · 86%
At a glance
- License
- cc-by-nc-sa-4.0
- Access
- Public
- Created
- Jul 29, 2024
- Updated
- Mar 17, 2025
- SHA
- 4d24a57a
Model card
From the Hugging Face model README
Model Card for hest-tissue-seg
DeepLabV3 model finetuned on HEST-1k and Acrobat for IHC/H&E tissue segmentation.
Please visit the HEST-library for instructions.
How to cite:
@article{jaume2024hest,
author = {Jaume, Guillaume and Doucet, Paul and Song, Andrew H. and Lu, Ming Y. and Almagro-Perez, Cristina and Wagner, Sophia J. and Vaidya, Anurag J. and Chen, Richard J. and Williamson, Drew F. K. and Kim, Ahrong and Mahmood, Faisal},
title = {{HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis}},
journal = {arXiv},
year = {2024},
month = jun,
eprint = {2406.16192},
url = {https://arxiv.org/abs/2406.16192v1}
}
Contact:
- <b>Guillaume Jaume</b> Harvard Medical School, Boston, Mahmood Lab (
[email protected]) - <b>Paul Doucet</b> Harvard Medical School, Boston, Mahmood Lab (
[email protected])
<i>The dataset is distributed under the Attribution-NonCommercial-ShareAlike 4.0 International license (CC BY-NC-SA 4.0 Deed)</i>
- License
- cc-by-nc-sa-4.0
- Created
- Jul 29, 2024
- Updated
- Mar 17, 2025