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biogpt-ner
MANAN-B94/biogpt-ner
biogpt-ner is a token classification model from MANAN-B94. Use it when you need labels on individual words, such as names. It is set up for transformers. The card lists the license as mit.
should probably proofread and complete it, then remove this comment. --
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At a glance
- Task
- Token Classification
- Library
- transformers
- License
- mit
- Model type
- biogpt
- Access
- Public
- Created
- Apr 12, 2025
- Updated
- Apr 12, 2025
- SHA
- 275b70cc
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Base models
Datasets
Model card
From the Hugging Face model README
<!-- This model card has been generated automatically according to the information the Trainer had access to. You
should probably proofread and complete it, then remove this comment. -->
biogpt-ner
This model is a fine-tuned version of microsoft/biogpt on the ncbi_disease dataset. It achieves the following results on the evaluation set:
- Loss: 0.1935
- Disease: {'precision': 0.5545851528384279, 'recall': 0.6195121951219512, 'f1': 0.5852534562211981, 'number': 1640}
- Overall Precision: 0.5546
- Overall Recall: 0.6195
- Overall F1: 0.5853
- Overall Accuracy: 0.9500
Model description
More information needed
Intended uses & limitations
More information needed
Training and evaluation data
More information needed
Training procedure
Training hyperparameters
The following hyperparameters were used during training:
- learning_rate: 2e-05
- train_batch_size: 8
- eval_batch_size: 8
- seed: 42
- optimizer: Use adamw_torch with betas=(0.9,0.999) and epsilon=1e-08 and optimizer_args=No additional optimizer arguments
- lr_scheduler_type: linear
- num_epochs: 3
Training results
| Training Loss | Epoch | Step | Validation Loss | Disease | Overall Precision | Overall Recall | Overall F1 | Overall Accuracy |
|---|---|---|---|---|---|---|---|---|
| 0.3019 | 1.0 | 680 | 0.1758 | {'precision': 0.46767617938264416, 'recall': 0.4896341463414634, 'f1': 0.4784033363121835, 'number': 1640} | 0.4677 | 0.4896 | 0.4784 | 0.9394 |
| 0.1606 | 2.0 | 1360 | 0.1641 | {'precision': 0.5137519460300985, 'recall': 0.6036585365853658, 'f1': 0.5550883095037846, 'number': 1640} | 0.5138 | 0.6037 | 0.5551 | 0.9455 |
| 0.0743 | 3.0 | 2040 | 0.1935 | {'precision': 0.5545851528384279, 'recall': 0.6195121951219512, 'f1': 0.5852534562211981, 'number': 1640} | 0.5546 | 0.6195 | 0.5853 | 0.9500 |
Framework versions
- Transformers 4.51.2
- Pytorch 2.6.0
- Datasets 3.5.0
- Tokenizers 0.21.1
- Task
- Token Classification
- Library
- transformers
- Type
- biogpt
- License
- mit
- Created
- Apr 12, 2025
- Updated
- Apr 12, 2025