Tyrisonase_test_model_600_6epoch

SentenceTransformer based on google-bert/bert-base-cased

This is a sentence-transformers model finetuned from google-bert/bert-base-cased on the csv dataset. It maps sentences & paragraphs to a 768-dimensional dense vector space and can be used for semantic textual similarity, semantic search, paraphrase mining, text classification, clustering, and more.

Model Details

Model Description

• Model Type: Sentence Transformer
• Base model: google-bert/bert-base-cased <!-- at revision cd5ef92a9fb2f889e972770a36d4ed042daf221e -->
• Maximum Sequence Length: 512 tokens
• Output Dimensionality: 768 dimensions
• Similarity Function: Cosine Similarity
• Training Dataset:
  • csv

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Model Sources

• Documentation: Sentence Transformers Documentation
• Repository: Sentence Transformers on GitHub
• Hugging Face: Sentence Transformers on Hugging Face

Full Model Architecture

SentenceTransformer(
  (0): Transformer({'max_seq_length': 512, 'do_lower_case': False, 'architecture': 'BertModel'})
  (1): Pooling({'word_embedding_dimension': 768, 'pooling_mode_cls_token': False, 'pooling_mode_mean_tokens': True, 'pooling_mode_max_tokens': False, 'pooling_mode_mean_sqrt_len_tokens': False, 'pooling_mode_weightedmean_tokens': False, 'pooling_mode_lasttoken': False, 'include_prompt': True})
)

Usage

Direct Usage (Sentence Transformers)

First install the Sentence Transformers library:

pip install -U sentence-transformers

Then you can load this model and run inference.

from sentence_transformers import SentenceTransformer

# Download from the 🤗 Hub
model = SentenceTransformer("Jimmy-Ooi/Tyrisonase_test_model_600_6epoch")
# Run inference
sentences = [
    'O=C(O)CSc1nnc(NC(=S)Nc2cccc(C(F)(F)F)c2)s1',
    'COc1ccc(NC(=O)NO)cc1',
    'CCCCc1ccc(/C(CC)=N/NC(N)=S)cc1',
]
embeddings = model.encode(sentences)
print(embeddings.shape)
# [3, 768]

# Get the similarity scores for the embeddings
similarities = model.similarity(embeddings, embeddings)
print(similarities)
# tensor([[1.0000, 0.6357, 0.8677],
#         [0.6357, 1.0000, 0.2004],
#         [0.8677, 0.2004, 1.0000]])

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Training Details

Training Dataset

csv

• Dataset: csv
• Size: 67,830 training samples
• Columns: <code>premise</code>, <code>hypothesis</code>, and <code>label</code>
• Approximate statistics based on the first 1000 samples:

  	premise	hypothesis	label
  type	string	string	int
  details	<ul><li>min: 11 tokens</li><li>mean: 38.27 tokens</li><li>max: 145 tokens</li></ul>	<ul><li>min: 11 tokens</li><li>mean: 37.66 tokens</li><li>max: 145 tokens</li></ul>	<ul><li>0: ~52.90%</li><li>2: ~47.10%</li></ul>

• Samples:

  premise	hypothesis	label
  <code>O=c1c(-c2ccc(O)cc2)coc2c(O)c(O)ccc12</code>	<code>O=C(/C=C/c1ccc(O)cc1)c1ccc(NS(=O)(=O)c2ccc(N+[O-])cc2)cc1</code>	<code>0</code>
  <code>O=c1c(-c2ccc(O)c(O)c2)coc2cc(O)ccc12</code>	<code>COc1ccc(C(=O)N/N=C/c2cc(OC)c(OC)c(OC)c2)cc1OC</code>	<code>0</code>
  <code>CC(C)=C/C(C)=N\NC(N)=S</code>	<code>[O-][n+]1ccccc1O</code>	<code>2</code>

• Loss: <code>SoftmaxLoss</code>

Evaluation Dataset

csv

• Dataset: csv
• Size: 11,970 evaluation samples
• Columns: <code>premise</code>, <code>hypothesis</code>, and <code>label</code>
• Approximate statistics based on the first 1000 samples:

  	premise	hypothesis	label
  type	string	string	int
  details	<ul><li>min: 11 tokens</li><li>mean: 37.67 tokens</li><li>max: 145 tokens</li></ul>	<ul><li>min: 11 tokens</li><li>mean: 38.81 tokens</li><li>max: 145 tokens</li></ul>	<ul><li>0: ~49.50%</li><li>2: ~50.50%</li></ul>

• Samples:

  premise	hypothesis	label
  <code>COc1cc(OC)c(C2CCN(C)C2CO)c(O)c1-c1cc(-c2ccc(F)cc2)[nH]n1</code>	<code>NC(=S)N/N=C/c1ccc(/C=C/c2ccccc2)cc1</code>	<code>2</code>
  <code>CC(=O)OC[C@H]1OC@@HC@HC@H[C@@H]1OC(C)=O</code>	<code>COc1cc(O)cc(O)c1C(=O)/C=C/c1ccc(O)cc1O</code>	<code>2</code>
  <code>CCCCC(=O)NC(=S)Nc1ccc(Br)cc1</code>	<code>CCCCc1ccc(/C(CC)=N/NC(N)=S)cc1</code>	<code>0</code>

• Loss: <code>SoftmaxLoss</code>

Training Hyperparameters

Non-Default Hyperparameters

• per_device_train_batch_size: 64
• per_device_eval_batch_size: 64
• weight_decay: 0.01
• num_train_epochs: 6
• warmup_steps: 100
• fp16: True

All Hyperparameters

<details><summary>Click to expand</summary>

• overwrite_output_dir: False
• do_predict: False
• eval_strategy: no
• prediction_loss_only: True
• per_device_train_batch_size: 64
• per_device_eval_batch_size: 64
• per_gpu_train_batch_size: None
• per_gpu_eval_batch_size: None
• gradient_accumulation_steps: 1
• eval_accumulation_steps: None
• torch_empty_cache_steps: None
• learning_rate: 5e-05
• weight_decay: 0.01
• adam_beta1: 0.9
• adam_beta2: 0.999
• adam_epsilon: 1e-08
• max_grad_norm: 1.0
• num_train_epochs: 6
• max_steps: -1
• lr_scheduler_type: linear
• lr_scheduler_kwargs: {}
• warmup_ratio: 0.0
• warmup_steps: 100
• log_level: passive
• log_level_replica: warning
• log_on_each_node: True
• logging_nan_inf_filter: True
• save_safetensors: True
• save_on_each_node: False
• save_only_model: False
• restore_callback_states_from_checkpoint: False
• no_cuda: False
• use_cpu: False
• use_mps_device: False
• seed: 42
• data_seed: None
• jit_mode_eval: False
• bf16: False
• fp16: True
• fp16_opt_level: O1
• half_precision_backend: auto
• bf16_full_eval: False
• fp16_full_eval: False
• tf32: None
• local_rank: 0
• ddp_backend: None
• tpu_num_cores: None
• tpu_metrics_debug: False
• debug: []
• dataloader_drop_last: False
• dataloader_num_workers: 0
• dataloader_prefetch_factor: None
• past_index: -1
• disable_tqdm: False
• remove_unused_columns: True
• label_names: None
• load_best_model_at_end: False
• ignore_data_skip: False
• fsdp: []
• fsdp_min_num_params: 0
• fsdp_config: {'min_num_params': 0, 'xla': False, 'xla_fsdp_v2': False, 'xla_fsdp_grad_ckpt': False}
• fsdp_transformer_layer_cls_to_wrap: None
• accelerator_config: {'split_batches': False, 'dispatch_batches': None, 'even_batches': True, 'use_seedable_sampler': True, 'non_blocking': False, 'gradient_accumulation_kwargs': None}
• parallelism_config: None
• deepspeed: None
• label_smoothing_factor: 0.0
• optim: adamw_torch_fused
• optim_args: None
• adafactor: False
• group_by_length: False
• length_column_name: length
• project: huggingface
• trackio_space_id: trackio
• ddp_find_unused_parameters: None
• ddp_bucket_cap_mb: None
• ddp_broadcast_buffers: False
• dataloader_pin_memory: True
• dataloader_persistent_workers: False
• skip_memory_metrics: True
• use_legacy_prediction_loop: False
• push_to_hub: False
• resume_from_checkpoint: None
• hub_model_id: None
• hub_strategy: every_save
• hub_private_repo: None
• hub_always_push: False
• hub_revision: None
• gradient_checkpointing: False
• gradient_checkpointing_kwargs: None
• include_inputs_for_metrics: False
• include_for_metrics: []
• eval_do_concat_batches: True
• fp16_backend: auto
• push_to_hub_model_id: None
• push_to_hub_organization: None
• mp_parameters:
• auto_find_batch_size: False
• full_determinism: False
• torchdynamo: None
• ray_scope: last
• ddp_timeout: 1800
• torch_compile: False
• torch_compile_backend: None
• torch_compile_mode: None
• include_tokens_per_second: False
• include_num_input_tokens_seen: no
• neftune_noise_alpha: None
• optim_target_modules: None
• batch_eval_metrics: False
• eval_on_start: False
• use_liger_kernel: False
• liger_kernel_config: None
• eval_use_gather_object: False
• average_tokens_across_devices: True
• prompts: None
• batch_sampler: batch_sampler
• multi_dataset_batch_sampler: proportional
• router_mapping: {}
• learning_rate_mapping: {}

</details>

Training Logs

Framework Versions

• Python: 3.12.12
• Sentence Transformers: 5.1.1
• Transformers: 4.57.0
• PyTorch: 2.8.0+cu126
• Accelerate: 1.10.1
• Datasets: 4.0.0
• Tokenizers: 0.22.1

Citation

BibTeX

Sentence Transformers and SoftmaxLoss

@inproceedings{reimers-2019-sentence-bert,
    title = "Sentence-BERT: Sentence Embeddings using Siamese BERT-Networks",
    author = "Reimers, Nils and Gurevych, Iryna",
    booktitle = "Proceedings of the 2019 Conference on Empirical Methods in Natural Language Processing",
    month = "11",
    year = "2019",
    publisher = "Association for Computational Linguistics",
    url = "https://arxiv.org/abs/1908.10084",
}

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