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pubmedbert-bc5cdr-ner
HFpf/pubmedbert-bc5cdr-ner
pubmedbert-bc5cdr-ner is a machine learning model from HFpf. Use it for the machine learning task on the model card, and read the license before you ship it in a product.
--- language: - en tags: - medical - clinical-ner - biobert - bc5cdr
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At a glance
- Model type
- bert
- Access
- Public
- Created
- Jun 11, 2026
- Updated
- Jun 11, 2026
- SHA
- 1b8e6d66
Model card
From the Hugging Face model README
language:
- en tags:
- medical
- clinical-ner
- biobert
- bc5cdr
Clinical NER Model: Chemicals & Diseases
Fine-tuned microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract on the BC5CDR dataset.
Entity Types
- Chemical (green)
- Disease (pink)
Usage
from transformers import pipeline
pipe = pipeline("token-classification", model="HFpf/pubmedbert-bc5cdr-ner")
result = pipe("The patient was treated with metformin for type 2 diabetes.")
print(result)
- Type
- bert
- Created
- Jun 11, 2026
- Updated
- Jun 11, 2026