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enformer-official-rough
EleutherAI/enformer-official-rough
enformer-official-rough is a machine learning model from EleutherAI. Use it for the machine learning task on the model card, and read the license before you ship it in a product. It is set up for transformers. The card lists the license as cc-by-4.0.
Enformer model. It was introduced in the paper Effective gene expression prediction from sequence by integrating long-range interactions. by Avsec et al. and first released in this repository.
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At a glance
- Library
- transformers
- License
- cc-by-4.0
- Model type
- enformer
- Access
- Public
- Created
- Jun 1, 2022
- Updated
- Jun 12, 2022
- SHA
- affe5713
Model card
From the Hugging Face model README
Enformer
Enformer model. It was introduced in the paper Effective gene expression prediction from sequence by integrating long-range interactions. by Avsec et al. and first released in this repository.
This repo contains the official weights released by Deepmind, ported over to Pytorch.
Model description
Enformer is a neural network architecture based on the Transformer that led to greatly increased accuracy in predicting gene expression from DNA sequence.
We refer to the paper published in Nature for details.
How to use
Refer to the README of enformer-pytorch regarding usage.
Citation info
Avsec, Ž., Agarwal, V., Visentin, D. et al. Effective gene expression prediction from sequence by integrating long-range interactions. Nat Methods 18, 1196–1203 (2021). https://doi.org/10.1038/s41592-021-01252-x
- Library
- transformers
- Type
- enformer
- License
- cc-by-4.0
- Created
- Jun 1, 2022
- Updated
- Jun 12, 2022