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AlignAIR-pretrained
AlignAIR/AlignAIR-pretrained
AlignAIR-pretrained is a machine learning model from AlignAIR. Use it for the machine learning task on the model card, and read the license before you ship it in a product. It is set up for alignair. The card lists the license as gpl-3.0.
Official pretrained models for AlignAIR, a neural aligner for immunoglobulin (IG) and T-cell-receptor (TCR) repertoires. This repository is the model registry the AlignAIR CLI reads from: registry.json lists every mod…
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Updated Jul 15, 2026
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At a glance
- Library
- alignair
- License
- gpl-3.0
- Access
- Public
- Created
- Feb 23, 2026
- Updated
- Jul 15, 2026
- SHA
- 08076e40
Model card
From the Hugging Face model README
AlignAIR pretrained models
Official pretrained models for AlignAIR, a neural aligner
for immunoglobulin (IG) and T-cell-receptor (TCR) repertoires. This repository is the model registry
the AlignAIR CLI reads from: registry.json lists every model + version, and each <id>/<version>.alignair
is a self-contained, pickle-free artifact (weights + embedded germline reference + model card).
Use from the CLI (no manual download)
pip install "AlignAIR[cli]"
alignair models list # this catalog, fetched live
alignair predict --input reads.fasta --out out.tsv --model alignair-igh-human
--model <id> downloads + hash-verifies + caches the artifact automatically. Pin a version with
--model <id>@<version>.
Models
| id | version | locus | species | description |
|---|---|---|---|---|
alignair-igh-human | 1.0.0 | IGH | Homo sapiens | Human IGH (heavy chain) aligner — calibrated. GenAIRR OGRDB reference (V198/D33/J7). |
alignair-igkl-human | 1.0.0 | IGK,IGL | Homo sapiens | Human IGK+IGL (light chain) aligner — calibrated. GenAIRR reference (V349/J18). |
alignair-tcrb-human | 1.0.0 | TRB | Homo sapiens | Human TRB (TCR beta) aligner — calibrated. GenAIRR reference (V98/D3/J16). |
Each artifact loads without executing any pickle. Reads are anonymous; publishing is maintainer-only.
- Library
- alignair
- License
- gpl-3.0
- Created
- Feb 23, 2026
- Updated
- Jul 15, 2026